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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGCATCGTATAAATTTTCTTCTTCAACAAAATTAGGGTTTGGAGCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaagaacagatccttataatccttaatctaattcgtgttcgtttcttttgattcttcaattgcgtgattctgattggatttgtttttgttttggtttgattttgttgtatag

Basic information

species Arabidopsis thaliana
transcript AT5G02610.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116410831|gb|EG453423.1|EG453423
EST:     GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
EST: gi|125296375|gb|EL310460.1|EL310460
EST:     GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTTCA
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCA
EST: gi|86026238|gb|DR321991.1|DR321991
EST:     GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
EST: gi|86026240|gb|DR321993.1|DR321993
EST:     GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
EST: gi|86026246|gb|DR321999.1|DR321999
EST:     GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
EST: gi|116458642|gb|EG501234.1|EG501234
EST:     AGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAGCACTCACGATGG                         CGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
genomic: AGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
EST: gi|86026245|gb|DR321998.1|DR321998
EST:     GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGATTCATGAGCTTAGAGATAAATCAAAGA-CAATCTTCAGA
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
EST: gi|86026239|gb|DR321992.1|DR321992
EST:     GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
EST: gi|86026249|gb|DR322002.1|DR322002
EST:     GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
EST: gi|86026244|gb|DR321997.1|DR321997
EST:     GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTGKAGA
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
EST: gi|124940308|gb|EL016770.1|EL016770
EST:     GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTTCA
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCA
EST: gi|86026250|gb|DR322003.1|DR322003
EST:     GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
EST: gi|86026247|gb|DR322000.1|DR322000
EST:     GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
EST: gi|125209497|gb|EL224451.1|EL224451
EST:     GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTT
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTT
EST: gi|86026241|gb|DR321994.1|DR321994
EST:     GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
EST: gi|164235913|gb|ES041170.1|ES041170
EST:     GCCAGAAAATAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTTCA
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCA
EST: gi|86026248|gb|DR322001.1|DR322001
EST:     AAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
genomic: AAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
EST: gi|86026243|gb|DR321996.1|DR321996
EST:     GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
EST: gi|86026242|gb|DR321995.1|DR321995
EST:     AAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
genomic: AAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGA
EST: gi|164047972|gb|ES001594.1|ES001594
EST:     GCCAGAAAATAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGG                         CGAGAATTAAGGTT
genomic: GCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaa ... tgttgtatagCGAGAATTAAGGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAAGGCATCGTATAAATTTTCTTCTTCAACAAAATTAGGGTTTGGAGCCAGAAAAGAGCAAATAGGCGGCACATCAGTTCTCAACACTCACGATGGgtatgacgaagaacagatccttataatccttaatctaattcgtgttcgtttcttttgattcttcaattgcgtgattctgattggatttgtttttgttttggtttgattttgttgtatag

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