1 5' 3' | 2 5' 3' |
AGAGAGAGATCCAAGAACATGAACTACACGGTGGATGATCAGAACATGGCTTTTATCTCTCAACTGTACCCTGATGTCTACACTCAGATAGTACAACCAGgtttgtccttttttgtaattagtttgttcgaaatttcatacctttttatttaaaagttcgacaaaacccaaaattcatggattttcttataaaaatagaa...
species | Arabidopsis thaliana |
transcript | AT4G36740.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTTATCTCTCAACTGTACCCTGATGTCTACACTCAGATAGTACAACCAG GAGAAGTGAAGCAGCCGAAGCGGAGGAGGAAGAAGACCAAAGGATCCGTGGEST: gi|86059584|gb|DR355341.1|DR355341
genomic: TTTTATCTCTCAACTGTACCCTGATGTCTACACTCAGATAGTACAACCAGgtttgtcctt ... tggtcagtagGAGAAGTGAAGCAGCCGAAGCGGAGGAGGAAGAAGACCAAAGGATCCGTGG
EST: TTTTATCTCTCAACTGTACCCTGATGTCTACACTCAGATAGTACAACCAG GAGAAGTGAAGCAGCCGAAGCGGAGGAGGAAGAAGACCAAAGGATCCGTGG
genomic: TTTTATCTCTCAACTGTACCCTGATGTCTACACTCAGATAGTACAACCAGgtttgtcctt ... tggtcagtagGAGAAGTGAAGCAGCCGAAGCGGAGGAGGAAGAAGACCAAAGGATCCGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGAGAGATCCAAGAACATGAACTACACGGTGGATGATCAGAACATGGCTTTTATCTCTCAACTGTACCCTGATGTCTACACTCAGATAGTACAACCAGgtttgtccttttttgtaattagtttgttcgaaatttcatacctttttatttaaaagttcgacaaaacccaaaattcatggattttcttataaaaatagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata