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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATAATTCTGCCATTGTCCATCATCAGAACAACAATCTCCAACTTGTTGAAACCCGTCCGGATAGAAATATCCAATATCTCAACAATATACTCACTGAGgtaaacaattttgttttaaagaaaaatgcaagagaattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgc...

Basic information

species Arabidopsis thaliana
transcript AT4G36590.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86052080|gb|DR347837.1|DR347837
EST:     AAACCCGTCCGGATAGAAATATCCAATATCTCAACAATATACTCACTGAG                         GTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTTTGG
genomic: AAACCCGTCCGGATAGAAATATCCAATATCTCAACAATATACTCACTGAGgtaaacaatt ... ctcattgcagGTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTTTGG
EST: gi|86052085|gb|DR347842.1|DR347842
EST:     AAACCCGTCCGGATAGAAATATCCAATATCTCAACAATATACTCACTGAG                         GTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTT-GGACCTA
genomic: AAACCCGTCCGGATAGAAATATCCAATATCTCAACAATATACTCACTGAGgtaaacaatt ... ctcattgcagGTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTTTGGACCTA
EST: gi|86052082|gb|DR347839.1|DR347839
EST:     AAACCCGTCCGGATAGAAATATCCAATATCTCAACAATATACTCACTGAG                         GTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTTTGGACCTA
genomic: AAACCCGTCCGGATAGAAATATCCAATATCTCAACAATATACTCACTGAGgtaaacaatt ... ctcattgcagGTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTTTGGACCTA
EST: gi|86052086|gb|DR347843.1|DR347843
EST:     AAACCCGTCCGGATAGAAATATCCAATATCTCAACAATATACTCACTGAG                         GTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTTTGGACCTA
genomic: AAACCCGTCCGGATAGAAATATCCAATATCTCAACAATATACTCACTGAGgtaaacaatt ... ctcattgcagGTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTTTGGACCTA
EST: gi|86052083|gb|DR347840.1|DR347840
EST:     AAACCCGTCCGGATAGAAATATCCAATATCTCAACAATATACTCACTGAG                         GTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTTTGGACCTA
genomic: AAACCCGTCCGGATAGAAATATCCAATATCTCAACAATATACTCACTGAGgtaaacaatt ... ctcattgcagGTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTTTGGACCTA
EST: gi|86052081|gb|DR347838.1|DR347838
EST:     AAACCCGTCCGGATAGAAATATCCAATATCTCAACAATATACTCACTGAG                         GTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTTTGGACCTA
genomic: AAACCCGTCCGGATAGAAATATCCAATATCTCAACAATATACTCACTGAGgtaaacaatt ... ctcattgcagGTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTTTGGACCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCATAATTCTGCCATTGTCCATCATCAGAACAACAATCTCCAACTTGTTGAAACCCGTCCGGATAGAAATATCCAATATCTCAACAATATACTCACTGAGgtaaacaattttgttttaaagaaaaatgcaagagaattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagagaa