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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACGAAAATGTTGATATCGTTGTGATAAGAGAGAACACTGAAGGAGAGTACTCAGGTCTCGAGCATGAGGTTGTTCCTGGTGTTGTCGAGAGCCTTAAGgtaaaccatatataattatagggattgtttttagtccaaattgtgatcccttttgtatacatgatgttgttgaattgtttgtgtag

Basic information

species Arabidopsis thaliana
transcript AT4G35650.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G35650.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G006672_T02 (Zea mays), 5'ss of exon 1
ACACGAAAATGTTGATATCGTTGTGATAAGAGAGAACACTGAAGGAGAGTACTCAGGTCTCGAGCATGAGGTTGTTCCTGGTGTTGTCGAGAGCCTTAAGgtaaaccatatataattatagggattgtttt-tagtccaaattgtgatcccttttgtatacatgatgttgttgaattgtttgtgtag------------------
 ||||| || || || ||||| || ||  | ||||||| ||| || |||||||| || |||||||||||||| |||||||| || || ||||| || ||||||     |  | ||||  | | |||| | |  |    | | ||   |   |                 | | |  |||   |   |                  
GCACGACAACGTGGACATCGTCGTCATTCGGGAGAACAGTGAGGGCGAGTACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgta-----tggagaattccatgtattgctctacaagtaataatgcagtgtgtggcacgctggcaggccagctaatatgtgcatacggctaaatgtgctaagctta

upper sequence: AT4G35650.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA02G04780.1 (Glycine max), 5'ss of exon 1
ACACGAAAATGTTGATATCGTTGTGATAAGAGAGAACACTGAAGGAGAGTACTCAGGTCTCGAGCATGAGGTTGTTCCTGGTGTTGTCGAGAGCCTTAAGgtaaaccatatataattatagggattgtttt-tagtccaaattgtgatcccttttgtatacatgatgttgttgaattgtttgtgtag--------------
 || || ||||||||||| ||||| || || |||||||| ||||| |||||||| || ||||| || ||||| ||||| || ||||| || |||||||||||   |  |   |        |  || |       |  | ||   |   | |  |      |  | |||   ||| |        |               
CCATGATAATGTTGATATTGTTGTCATCAGGGAGAACACCGAAGGCGAGTACTCCGGCCTCGAACACGAGGTCGTTCCCGGCGTTGTTGAAAGCCTTAAGgtgtgctcttcctctcctctcgctttctcacactttttacatatagggtcttgctaagggtacta-gttaacgaactaaaaagagaaatcatttactttga

upper sequence: AT4G35650.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA16G22640.1 (Glycine max), 5'ss of exon 1
ACACGAAAATGTTGATATCGTTGTGATAAGAGAGAACACTGAAGGAGAGTACTCAGGTCTCGAGCATGAGGTTGTTCCTGGTGTTGTCGAGAGCCTTAAGgtaaaccatatataattatagggattgtttttagtccaaat-tgtgatcccttttgtatacatgatgttgttgaattgtttgtgtag----------------
 || || ||||| ||||||||||| || || |||||||| ||||| || ||||| || ||||| || ||||| ||||| || ||||| || |||||||||||      | |  | |      | ||  |     |    || | | |||   ||||| | |   ||||| ||  ||| ||| | ||                 
CCATGATAATGTGGATATCGTTGTCATCAGGGAGAACACCGAAGGCGAATACTCTGGCCTCGAACACGAGGTCGTTCCCGGCGTTGTTGAAAGCCTTAAGgtgcgttct-tccactcccctcgctttctcacgctttttatatattatcaaatttgttttct--atgtttttctattatttatttatttgtttttgaaattag

upper sequence: AT4G35650.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv03s0038g03120.t01 (Vitis vinifera), 5'ss of exon 1
ACACGAAAATGTTGATATCGTTGTGATAAGAGAGAACACTGAAGGAGAGTACTCAGGTCTCGAGCATGAGGTTGTTCCTGGTGTTGTCGAGAGCCTTAAGgtaaaccatatataatta--tagggattgtttttagtccaaattgtgatcc-cttttgtatacatgatgttgttgaattgtttgtgtag-----------
 ||| |  |||||||||| |||||| | || |||||||| || || |||||| | || || ||||| ||||| ||||| || || ||||| |||||||||||||    | | |   |   ||| ||     |  |    |||     ||   ||||||  |   |  || |    ||     | |  |            
GCACAATGATGTTGATATTGTTGTGGTGAGGGAGAACACGGAGGGCGAGTACGCTGGGCTTGAGCACGAGGTCGTTCCCGGCGTGGTCGAAAGCCTTAAGgtaacgtctgtttggatgcctagagaactggtggaacataaaagaaaatagacttttggttctgttttggtaagaaaaaaaatataaaatgcgaccccta

upper sequence: AT4G35650.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv04s0210g00180.t01 (Vitis vinifera), 5'ss of exon 1
ACACGAAAATGTTGATATCGTTGTGATAAGAGAGAACACTGAAGGAGAGTACTCAGGTCTCGAGCATGAGGTTGTTCCTGGTGTTGTCGAGAGCCTTAAGgtaaaccatatataattatagggattgtttttagtccaaattgtgatccctt-ttgtatacatgatgttgt-tgaattgtttgtgtag-------------
 ||| | ||||| ||||| || |||||  | ||||| || ||||| |||||||| || |||||||| ||||| ||||| ||||| || || |||||||||||     || | | ||||    |  || |  |  |       ||   ||  |  |||  |  |    || | |  ||| |    ||||             
GCACCAGAATGTGGATATAGTCGTGATTCGGGAGAATACGGAAGGCGAGTACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttt-tgatttgttattaccttgtctgatggttattttggccgtttcccaatgctgttcaattttccttttctcgattttagaggtagaggatcatttggt

upper sequence: AT4G35650.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S212_85V6.2 (Physcomitrella patens), 5'ss of exon 2
ACACGAAAATGTTGATATCGTTGTGATAAGAGAGAACACTGAAGGAGAGTACTCAGGTCTCGAGCATGAGGTTGTTCCTGGTGTTGTCGAGAGCCTTAAGgtaa--accatatat------------aattatagggattgtttttagtccaaattgtgatc--ccttttgtatacatgatgttgttgaattgtttgtgtag
 ||||| |||||  | || || || ||  ||||||||||||||||||||||||| ||||| ||||| ||||| || || || |||||||||||||| |||||||  | | |||              | | |||   | | |  |  ||   || || |      ||| | ||  |||   ||| |  | || | ||  |  
CCACGATAATGTCAACATTGTGGTTATTCGAGAGAACACTGAAGGAGAGTACTCTGGTCTTGAGCACGAGGTCGTCCCCGGGGTTGTCGAGAGCCTCAAGgtaattatcttattcttgaaccctacaagtaatacacaatttaatgcgtatgaactgcggcaaatcttctttactcatttcgttatgcacttttctgcat--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875928|gb|AU236759.1|AU236759
EST:     CTCAGGTCTCGAGCATGAGGGTTGTTCCTGGTGTTGNCGAGAGCCTTAAG                         GTGATAACAAAGTTTTGTTCTGAGAGAATAGCGAGATATGCATTTGAGTAT
genomic: CTCAGGTCTCGAGCATGAGG-TTGTTCCTGGTGTTGTCGAGAGCCTTAAGgtaaaccata ... gtttgtgtagGTGATAACAAAGTTTTGTTCTGAGAGAATAGCGAGATATGCATTTGAGTAT