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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAATAAATAATTTTTCTCTTGTCGTCATATTAAAAAAAAGAAAGATTATCTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGGgttaatttcttcttcttcttccttttcttactaaattctcttaggtagttgtcgattcgatttctttgtcttcctcttcgcttattttcgttgaatctcttgtttacaccttttcctgaaaacaaaattgtgttttttgtag

Basic information

species Arabidopsis thaliana
transcript AT4G35450.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86041554|gb|DR337309.1|DR337309
EST:     CTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGG                         GGTTTTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
genomic: CTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGGgttaatttct ... ttttttgtagGGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
EST: gi|86041565|gb|DR337320.1|DR337320
EST:     CTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGG                         GGTTTTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
genomic: CTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGGgttaatttct ... ttttttgtagGGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
EST: gi|124712344|gb|EH803746.1|EH803746
EST:     CACAACATTGTCTTTTCGG                         GGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
genomic: CACAACATTGTCTTTTCGGgttaatttct ... ttttttgtagGGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
EST: gi|86041562|gb|DR337317.1|DR337317
EST:     CTGTATTTCAAGTTTCATGAGSGTTTGCCACCAMAACATTGTCTTTTCGG                         GGTTTTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
genomic: CTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGGgttaatttct ... ttttttgtagGGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
EST: gi|86041557|gb|DR337312.1|DR337312
EST:     CTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGG                         GGTTTTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
genomic: CTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGGgttaatttct ... ttttttgtagGGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
EST: gi|86041567|gb|DR337322.1|DR337322
EST:     CTGTATTTCAAGTTTCATGAGSGTTTGCCACCACAACATTGTCTTTTCGG                         GGTTTTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
genomic: CTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGGgttaatttct ... ttttttgtagGGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
EST: gi|125323919|gb|EL337999.1|EL337999
EST:     CTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGG                         GGTTTTAGTCATACTTAATGGCTTCCAA
genomic: CTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGGgttaatttct ... ttttttgtagGGTTTTAGTCATACTTAATGGCTTCCAA
EST: gi|86041568|gb|DR337323.1|DR337323
EST:     CTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGG                         GGTTTTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
genomic: CTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGGgttaatttct ... ttttttgtagGGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
EST: gi|86041563|gb|DR337318.1|DR337318
EST:     ATTGTCTTTTCGG                         GGTTTTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
genomic: ATTGTCTTTTCGGgttaatttct ... ttttttgtagGGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
EST: gi|124891466|gb|EH970368.1|EH970368
EST:     GCCACCACAACATTGTCTTTTCGG                         GGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAA-TCCTCTTCTTT
genomic: GCCACCACAACATTGTCTTTTCGGgttaatttct ... ttttttgtagGGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
EST: gi|86041553|gb|DR337308.1|DR337308
EST:     CTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGG                         GGTTTTAGTCATATTTAATGGCTTCMAATTCGGAGAAAAATCCTCTTCTTT
genomic: CTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGGgttaatttct ... ttttttgtagGGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
EST: gi|124836550|gb|EH920989.1|EH920989
EST:     ACCACAACATTGTCTTTTCGG                         GGTTTTTGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
genomic: ACCACAACATTGTCTTTTCGGgttaatttct ... ttttttgtagGGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
EST: gi|86041552|gb|DR337307.1|DR337307
EST:     CTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGG                         GGTTTTAGTCATATTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT
genomic: CTGTATTTCAAGTTTCATGAGCGTTTGCCACCACAACATTGTCTTTTCGGgttaatttct ... ttttttgtagGGTTTTAGTCATACTTAATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTT