1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TAAAAGATAGAAGACGGAATTATGAGTGGAGCTGTGCTTGTTGCTATTGCTGCTGCTGTTGGCAACTTGTTACAAGGATGGGATAACGCAACTATTGCAGgtgattgattatcttctgtatccataattctgtttatgaaatttaggatcgataaagtcaggatttttatggatacaattcacagatcttttagcttatctcttttgcttgtgtgatggattttaagttttctttgggtactctgcag
species | Arabidopsis thaliana |
transcript | AT4G35300.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCTGCTGTTGGCAACTTGTTACAAGGATGGGATAACGCAACTATTGCAG GAGCTGTGTTGTACATAAAAAAGGAGTTTAATTTGGAGAGTAATCCATCAGEST: gi|163974085|gb|ES158177.1|ES158177
genomic: TGCTGCTGTTGGCAACTTGTTACAAGGATGGGATAACGCAACTATTGCAGgtgattgatt ... tactctgcagGAGCTGTGTTGTACATAAAAAAGGAGTTTAATTTGGAGAGTAATCCATCAG
EST: AAGGATGGGATAACGCAACTATTGCAG GAGCTGTGTTGTACATAAAAAAGGAGTTTAATTTGGAGAGTAATCCATCAGEST: gi|116447856|gb|EG490448.1|EG490448
genomic: AAGGATGGGATAACGCAACTATTGCAGgtgattgatt ... tactctgcagGAGCTGTGTTGTACATAAAAAAGGAGTTTAATTTGGAGAGTAATCCATCAG
EST: TGCTGCTGTTGGCAACTTGTTACAAGGATGGGATAACGCAACTATTGCAG GAGCTGTGTTGTACATAAAAAAGGAGTTTAATTTGGAGAGTAATCCATCAG
genomic: TGCTGCTGTTGGCAACTTGTTACAAGGATGGGATAACGCAACTATTGCAGgtgattgatt ... tactctgcagGAGCTGTGTTGTACATAAAAAAGGAGTTTAATTTGGAGAGTAATCCATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAAAGATAGAAGACGGAATTATGAGTGGAGCTGTGCTTGTTGCTATTGCTGCTGCTGTTGGCAACTTGTTACAAGGATGGGATAACGCAACTATTGCAGgtgattgattatcttctgtatccataattctgtttatgaaatttaggatcgataaagtcaggatttttatggatacaattcacagatcttttagcttatctcttttgcttgtgtgatggattttaagttttctttgggtactctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG