1 5' 3' | 2 5' 3' | 3 5' 3' |
CCATGAGAATGTTGACATCGTTGTCATCAGAGAGAACACTGAAGGTGAGTACGCGGGGCTTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAGgtgagaattccgatttctgctcctcgttttggattcaatctgtatttgtggaatcatcttcgtttgcaagtggtctttgtatgttatgtgtgattgttctgatcctatttctatgcttag
species | Arabidopsis thaliana |
transcript | AT4G35260.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAG GTGATCACGAAGTTCTGTTCGGAGCGTAEST: gi|124993120|gb|EL065389.1|EL065389
genomic: GCTTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAGgtgagaattc ... ctatgcttagGTGATCACGAAGTTCTGTTCGGAGCGTA
EST: TTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAG GTGATCACGAAGTTCTGTTCGGAGCGTATTGEST: gi|124984182|gb|EL056856.1|EL056856
genomic: TTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAGgtgagaattc ... ctatgcttagGTGATCACGAAGTTCTGTTCGGAGCGTATTG
EST: CGGGGCTTTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAG GTGATCACGAAGTTCTGTTCGGAGCGTAEST: gi|124832646|gb|EH917085.1|EH917085
genomic: CGGGGC-TTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAGgtgagaattc ... ctatgcttagGTGATCACGAAGTTCTGTTCGGAGCGTA
EST: GCTTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAG GTGATCACGAAGTTCTGTTCGGAGCGTATTGCAAAGEST: gi|125251470|gb|EL265555.1|EL265555
genomic: GCTTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAGgtgagaattc ... ctatgcttagGTGATCACGAAGTTCTGTTCGGAGCGTATTGCAAAG
EST: CGGGGCTTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAG GTGATCACGAAGTTCTGTTCGGAGCGTAEST: gi|125273578|gb|EL287663.1|EL287663
genomic: CGGGGCTTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAGgtgagaattc ... ctatgcttagGTGATCACGAAGTTCTGTTCGGAGCGTA
EST: ACGCGGGGCTTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAG GTGATCACGAAGTTCTGTTCGGAGCGTATTGCAAAGTATGCTTTTGAGEST: gi|164145543|gb|EL967368.1|EL967368
genomic: ACGCGGGGCTTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAGgtgagaattc ... ctatgcttagGTGATCACGAAGTTCTGTTCGGAGCGTATTGCAAAGTATGCTTTTGAG
EST: ACGCGGGGCTTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAG GTGATCACGAAG
genomic: ACGCGGGGCTTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAGgtgagaattc ... ctatgcttagGTGATCACGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATGAGAATGTTGACATCGTTGTCATCAGAGAGAACACTGAAGGTGAGTACGCGGGGCTTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAGgtgagaattccgatttctgctcctcgttttggattcaatctgtatttgtggaatcatcttcgtttgcaagtggtctttgtatgttatgtgtgattgttctgatcctatttctatgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG