1 5' 3' | 2 5' 3' | 3 5' 3' |
GAATAGTAGAAGAAGAAGAAAGGGAGAGTCTTGTGATATCTACGTAGAAGGAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttctttctctcttcgctacccttcttcttcctctagttgtacaattgtctctataatgtatgtatctgactagtttcggatttcatgtttccag
species | Arabidopsis thaliana |
transcript | AT4G34190.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCA ATTCTGGTGCCCTAAAGCTAGCCAACAATCACAAACCCAACTTCTACATGTEST: gi|125292307|gb|EL306392.1|EL306392
genomic: AAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAGCCA-CAATCACAAACCCAACTTCTACATGT
EST: GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCA ATTCTGGTGCCCTAAAGEST: gi|124824710|gb|EH909576.1|EH909576
genomic: GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAG
EST: ATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCA ATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTCEST: gi|124955326|gb|EL030348.1|EL030348
genomic: ATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
EST: TCTCGCCTTTTCTCTTCCCA ATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTCEST: gi|125187465|gb|EL202419.1|EL202419
genomic: TCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
EST: GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCA ATTCTGGTGCCCTAAAGEST: gi|125037772|gb|EL110041.1|EL110041
genomic: GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAG
EST: GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCA ATTCTGGTGCCCTAAAGCTAGCCACAAEST: gi|125223675|gb|EL237760.1|EL237760
genomic: GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAGCCACAA
EST: GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCA ATTCTGGTGCCCTAAAGCTAGEST: gi|47831402|gb|CK121086.1|CK121086
genomic: GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAG
EST: GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCA ATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTCEST: gi|125299287|gb|EL313372.1|EL313372
genomic: GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
EST: AAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCA ATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTCEST: gi|124861544|gb|EH945981.1|EH945981
genomic: AAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
EST: TGTCTGCGTCTCTCGCCTTTTCTCTTCCCA ATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTCEST: gi|125024352|gb|EL096621.1|EL096621
genomic: TGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
EST: TGTCTGCGTCTCTCGCCTTTTCTCTTCCCA ATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
genomic: TGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATAGTAGAAGAAGAAGAAAGGGAGAGTCTTGTGATATCTACGTAGAAGGAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttctttctctcttcgctacccttcttcttcctctagttgtacaattgtctctataatgtatgtatctgactagtttcggatttcatgtttccag
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