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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATAGTAGAAGAAGAAGAAAGGGAGAGTCTTGTGATATCTACGTAGAAGGAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttctttctctcttcgctacccttcttcttcctctagttgtacaattgtctctataatgtatgtatctgactagtttcggatttcatgtttccag

Basic information

species Arabidopsis thaliana
transcript AT4G34190.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125216885|gb|EL230968.1|EL230968
EST:     AAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCA                         ATTCTGGTGCCCTAAAGCTAGCCAACAATCACAAACCCAACTTCTACATGT
genomic: AAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAGCCA-CAATCACAAACCCAACTTCTACATGT
EST: gi|125292307|gb|EL306392.1|EL306392
EST:     GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCA                         ATTCTGGTGCCCTAAAG
genomic: GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAG
EST: gi|124824710|gb|EH909576.1|EH909576
EST:     ATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCA                         ATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
genomic: ATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
EST: gi|124955326|gb|EL030348.1|EL030348
EST:     TCTCGCCTTTTCTCTTCCCA                         ATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
genomic: TCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
EST: gi|125187465|gb|EL202419.1|EL202419
EST:     GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCA                         ATTCTGGTGCCCTAAAG
genomic: GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAG
EST: gi|125037772|gb|EL110041.1|EL110041
EST:     GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCA                         ATTCTGGTGCCCTAAAGCTAGCCACAA
genomic: GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAGCCACAA
EST: gi|125223675|gb|EL237760.1|EL237760
EST:     GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCA                         ATTCTGGTGCCCTAAAGCTAG
genomic: GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAG
EST: gi|47831402|gb|CK121086.1|CK121086
EST:     GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCA                         ATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
genomic: GAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
EST: gi|125299287|gb|EL313372.1|EL313372
EST:     AAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCA                         ATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
genomic: AAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
EST: gi|124861544|gb|EH945981.1|EH945981
EST:     TGTCTGCGTCTCTCGCCTTTTCTCTTCCCA                         ATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
genomic: TGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
EST: gi|125024352|gb|EL096621.1|EL096621
EST:     TGTCTGCGTCTCTCGCCTTTTCTCTTCCCA                         ATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC
genomic: TGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttc ... atgtttccagATTCTGGTGCCCTAAAGCTAGCCACAATCACAAACCCAACTTCTACATGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATAGTAGAAGAAGAAGAAAGGGAGAGTCTTGTGATATCTACGTAGAAGGAAGATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAgtactctttctttctctcttcgctacccttcttcttcctctagttgtacaattgtctctataatgtatgtatctgactagtttcggatttcatgtttccag

- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG