1 5' 3' | 2 5' 3' | 3 5' 3' |
GACATCATCGACCAATGGAGAAGATCAGAAGCAGTCTCAGAATCTTCGACATCAAGAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAGgtctgtttttttgttttactcaaaaactctgcttttcaattcaatttcagcaatctaaatctcaattaaaaaaatcaacacag
species | Arabidopsis thaliana |
transcript | AT4G34050.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCAAGAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAG TATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAGGAAEST: gi|125222855|gb|EL236940.1|EL236940
genomic: ATCAAGAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAGgtctgttttt ... atcaacacagTATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAGGAA
EST: AAGAGTCTCTTACAGAGCGATGATCTCTACCAG TATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAEST: gi|124822616|gb|EH907482.1|EH907482
genomic: AAGAGTCTCTTACAGAGCGATGATCTCTACCAGgtctgttttt ... atcaacacagTATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGA
EST: CTTACAGAGCGATGATCTCTACCAG TATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAGGAAEST: gi|86020813|gb|DR316559.1|DR316559
genomic: CTTACAGAGCGATGATCTCTACCAGgtctgttttt ... atcaacacagTATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAGGAA
EST: ATCAAGAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAG TATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAGGAAEST: gi|86020787|gb|DR316533.1|DR316533
genomic: ATCAAGAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAGgtctgttttt ... atcaacacagTATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAGGAA
EST: ATCAAGAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAG TATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAGGAAEST: gi|124730985|gb|EH822387.1|EH822387
genomic: ATCAAGAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAGgtctgttttt ... atcaacacagTATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAGGAA
EST: ATCAAGAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAG TATATACTGGAGACAAGTGTGTATEST: gi|124773910|gb|EH864039.1|EH864039
genomic: ATCAAGAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAGgtctgttttt ... atcaacacagTATATACTGGAGACAAGTGTGTAT
EST: AAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAG TATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGEST: gi|116475760|gb|EG518352.1|EG518352
genomic: AAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAGgtctgttttt ... atcaacacagTATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATG
EST: ATCAAGAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAG TATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAGGAAEST: gi|124924253|gb|EL002367.1|EL002367
genomic: ATCAAGAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAGgtctgttttt ... atcaacacagTATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAGGAA
EST: AGTCTCTTACAGAGCGATGATCTCTACCAG TATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAGGAAEST: gi|47832008|gb|CK121692.1|CK121692
genomic: AGTCTCTTACAGAGCGATGATCTCTACCAGgtctgttttt ... atcaacacagTATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAGGAA
EST: ATCAAGAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAG TATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAGGAAEST: gi|116475771|gb|EG518363.1|EG518363
genomic: ATCAAGAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAGgtctgttttt ... atcaacacagTATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAGGAA
EST: CAAGAAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCCAG TATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAAGGEST: gi|124743995|gb|EH835157.1|EH835157
genomic: CAAG-AAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTA-CCAGgtctgttttt ... atcaacacagTATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATG-AAGG
EST: TTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAG TATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAEST: gi|116377761|gb|EG420353.1|EG420353
genomic: TTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAGgtctgttttt ... atcaacacagTATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGA
EST: ATCAAGAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCGG TATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAGGAA
genomic: ATCAAGAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAGgtctgttttt ... atcaacacagTATATACTGGAGACAAGTGTGTATCCTAGAGAACCAGAATCAATGAAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACATCATCGACCAATGGAGAAGATCAGAAGCAGTCTCAGAATCTTCGACATCAAGAAGTTGGTCACAAGAGTCTCTTACAGAGCGATGATCTCTACCAGgtctgtttttttgttttactcaaaaactctgcttttcaattcaatttcagcaatctaaatctcaattaaaaaaatcaacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT