1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTTGGTTTCTGGGTTTTCTTCTTCTTCTTCTGCGGCGCTCTCCAATTTTACACCTTGCGACCAGCGAGAAAAGAAACAAATTTCACCCCCATTGAAGAAGgtttgtttcccctaattgcttgattttattctgagattaatcccaggcgccaattatatgcttctgttcttctgataaatctttgcccttttacgatttt...
species | Arabidopsis thaliana |
transcript | AT4G32600.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CACCTTGCGACCAGCGAGAAAAGAAACAAATTTCACCCCCATTGAAGAAG GACCTTTGGTTAAGCTCCATGGTGTGGTATGCGCAAAGTGGACAATACCTAEST: gi|86058415|gb|DR354172.1|DR354172
genomic: CACCTTGCGACCAGCGAGAAAAGAAACAAATTTCACCCCCATTGAAGAAGgtttgtttcc ... ggatttgcagGACCTTTGGTTAAGCTCCATGGTGTGGTATGCGCAAAGTGGACAATACCTA
EST: CACCTTGCGACCAGCGAGAAAAGAAACAAATTTCACCCCCATTGAAGAAG GACCTTTGGTTAAGCTCCATGGTGTGGTATGCGCAAAGTGGACAATACCTAEST: gi|164173531|gb|ES104786.1|ES104786
genomic: CACCTTGCGACCAGCGAGAAAAGAAACAAATTTCACCCCCATTGAAGAAGgtttgtttcc ... ggatttgcagGACCTTTGGTTAAGCTCCATGGTGTGGTATGCGCAAAGTGGACAATACCTA
EST: CGAGAAAAGAAACAAATTTCACCCCCATTGAAGAAG GACCTTTGGTTAAACTCCATGGTGTGGTATGCGCAAAGTGGACAATACCTA
genomic: CGAGAAAAGAAACAAATTTCACCCCCATTGAAGAAGgtttgtttcc ... ggatttgcagGACCTTTGGTTAAGCTCCATGGTGTGGTATGCGCAAAGTGGACAATACCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGTTTCTGGGTTTTCTTCTTCTTCTTCTGCGGCGCTCTCCAATTTTACACCTTGCGACCAGCGAGAAAAGAAACAAATTTCACCCCCATTGAAGAAGgtttgtttcccctaattgcttgattttattctgagattaatcccaggcgccaattatatgcttctgttcttctgataaatctttgcccttttacgatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcccct