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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCGGATAATAAGGCGGCTAAAGCGGCGATGACTCCTTCCACGGCTTCTGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGATCTCGgttctgctctgtctctctatctctctctcctgatgtttttgttgttgttgacgtagtgtgcttacgctgatgaggttttgagctgattcctctgtacatt...

Basic information

species Arabidopsis thaliana
transcript AT4G32570.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86044475|gb|DR340230.1|DR340230
EST:     ACTCGGCGGTCTCTCCTCAACCTCCGATCTCG                         TCGAAAGACACAGCGGCGGNGGGAATCATCTTGATGGGATACAATTGTTTG
genomic: ACTCGGCGGTCTCTCCTCAACCTCCGATCTCGgttctgctct ... cattgtttagTCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
EST: gi|86044477|gb|DR340232.1|DR340232
EST:     TGCTTCCTCCGCSGGTGGACTCGGCGGTCTCTCCTCAACCTCSGATCTCG                         TCGAAAGACACAGCGGCGGTGGGA-TCATCTTGATGGGATACAATTGTTTG
genomic: TGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGATCTCGgttctgctct ... cattgtttagTCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
EST: gi|86044480|gb|DR340235.1|DR340235
EST:     ACTCGGCGGTCTCTCCTCAACCTCCGATCTCG                         TCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
genomic: ACTCGGCGGTCTCTCCTCAACCTCCGATCTCGgttctgctct ... cattgtttagTCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
EST: gi|86044476|gb|DR340231.1|DR340231
EST:     TGMTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGATCTCG                         TCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
genomic: TGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGATCTCGgttctgctct ... cattgtttagTCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
EST: gi|19874833|gb|AU235664.1|AU235664
EST:     TGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGATCTCG                         TCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
genomic: TGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGATCTCGgttctgctct ... cattgtttagTCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
EST: gi|86044474|gb|DR340229.1|DR340229
EST:     TGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGATCTCG                         TCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
genomic: TGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGATCTCGgttctgctct ... cattgtttagTCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
EST: gi|116469033|gb|EG511625.1|EG511625
EST:     TGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGATCTCG                         TCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
genomic: TGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGATCTCGgttctgctct ... cattgtttagTCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
EST: gi|86044472|gb|DR340227.1|DR340227
EST:     TGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGATCTCG                         TCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
genomic: TGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGATCTCGgttctgctct ... cattgtttagTCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
EST: gi|86044473|gb|DR340228.1|DR340228
EST:     ACTCGGCGGTCTCTCCTCAACCTCCGATCTCG                         TCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
genomic: ACTCGGCGGTCTCTCCTCAACCTCCGATCTCGgttctgctct ... cattgtttagTCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
EST: gi|116469032|gb|EG511624.1|EG511624
EST:     TGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGATCTCG                         TCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG
genomic: TGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGATCTCGgttctgctct ... cattgtttagTCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCACCGGATAATAAGGCGGCTAAAGCGGCGATGACTCCTTCCACGGCTTCTGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGATCTCGgttctgctctgtctctctatctctctctcctgatgtttttgttgttgttgacgtagtgtgcttacgctgatgaggttttgagctgattcctctgtacatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctct