1 5' 3' | 2 5' 3' | 3 5' 3' |
AGTCTGGAAAAAAAGAGTAAATGGGAAGCGACGACTGACTCTTCTTCCTCCTCCTCCTCCACCTCTTGTTTAGGTTCTTAGCACTGAAATTTGATCAGAAgtaagcttgtgggttatgatcttattactttgtgggtattgattttgtcgatcggattcagagtttttctcttttcgatcgttttacttatccagtacac...
species | Arabidopsis thaliana |
transcript | AT4G31170.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCCTCCTCCACCTCTTGTTTAGGTTCTTAGCACTGAAATTTGATCAGAA GGTGTTGACGGTGTAGAGCTTCACGAAACATAAACTTTCATTTCTTCTAGCEST: gi|125197993|gb|EL212947.1|EL212947
genomic: CTCCTCCTCCACCTCTTGTTTAGGTTCTTAGCACTGAAATTTGATCAGAAgtaagcttgt ... tctattttagGGTGTTGACGGTGTAGAGCTTCACGAAACATAAACTTTCATTTCTTCTAGC
EST: GGTTCTTAGCACTGAAATTTGATCAGAA GGTGTTGACGGTGTAGAGCTTCACGAAACATAAAACTTTCATTTCTTTCTAEST: gi|86051555|gb|DR347310.1|DR347310
genomic: GGTTCTTAGCACTGAAATTTGATCAGAAgtaagcttgt ... tctattttagGGTGTTGACGGTGTAGAGCTTCACGAAACATAAA-CTTTCATTTCTT-CTA
EST: CTCCTCCTCCACCTCTTGTTTAGGTTCTTAGCACTGAAATTTGATCAGAA GGTGTTGACGGTGTAGAGCTTCACGAAACAGAAACTTTCATTTCTTCTAGCEST: gi|116384332|gb|EG426924.1|EG426924
genomic: CTCCTCCTCCACCTCTTGTTTAGGTTCTTAGCACTGAAATTTGATCAGAAgtaagcttgt ... tctattttagGGTGTTGACGGTGTAGAGCTTCACGAAACATAAACTTTCATTTCTTCTAGC
EST: CTCCTCCTCCACCTCTTGTTTAGGTTCTTAGCACTGAAATTTGATCAGAA GGTGTTGACGGTGTAGAGCTTCACGAAACATAAACTTTCATTTCTTCTAGC
genomic: CTCCTCCTCCACCTCTTGTTTAGGTTCTTAGCACTGAAATTTGATCAGAAgtaagcttgt ... tctattttagGGTGTTGACGGTGTAGAGCTTCACGAAACATAAACTTTCATTTCTTCTAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCTGGAAAAAAAGAGTAAATGGGAAGCGACGACTGACTCTTCTTCCTCCTCCTCCTCCACCTCTTGTTTAGGTTCTTAGCACTGAAATTTGATCAGAAgtaagcttgtgggttatgatcttattactttgtgggtattgattttgtcgatcggattcagagtttttctcttttcgatcgttttacttatccagtacac
- - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC