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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCCCAAATTCGATCTCGAAGGGGGACATAGAGAAGTCTTTCGCGAAGGAGAATCACGAGACTTTGATTACTTTTGGCACTCTTATGTTTTCTTACTGgtatgattctctatctcccaacctcagattcattggatctctgattttaagcttctacatttggtttcatcaatcccaattttgattctaattcaaaatc...

Basic information

species Arabidopsis thaliana
transcript AT4G30710.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116446436|gb|EG489028.1|EG489028
EST:     GAGAATCACGAGACTTTGATTACTTTTGGCACTCTTATGTTTTCTTACTG                         AATAAAGGGACTTCATTTACAGCAACTGGAGCTGTTTTTATTGTTTACCTC
genomic: GAGAATCACGAGACTTTGATTACTTTTGGCACTCTTATGTTTTCTTACTGgtatgattct ... tttcttgcagAATAAAGGGACTTCATTTACAGCAACTGGAGCTGTTTTTATTGTTTACCTC
EST: gi|116443791|gb|EG486383.1|EG486383
EST:     GAGAATCACGAGACTTTGATTACTTTTGGCACTCTTATGTTTTCTTACTG                         AATAAAGGGACTTCATTTACAGCAACTGGAGCTGTTTTTATTGTTTACCTC
genomic: GAGAATCACGAGACTTTGATTACTTTTGGCACTCTTATGTTTTCTTACTGgtatgattct ... tttcttgcagAATAAAGGGACTTCATTTACAGCAACTGGAGCTGTTTTTATTGTTTACCTC