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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTTTTTGTGAATTCACTGTTGAGAAGCGCCGGAGAAGATGAAGCTGAAGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCTAAAgtatgtgaaaaatattataactttgaatactaaagattgatttcgtcgaacaaactcttttgattttgattttttgtgtggcag

Basic information

species Arabidopsis thaliana
transcript AT4G28830.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G28830.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv11s0016g03520.t01 (Vitis vinifera), 5'ss of exon 1
-----CTGCTTTTTGTGAATTCACTGTTGAGAAGCGCCGGAGAAGATGAAGCTGAAGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCTAAAgtatgtgaaaaat-attataactttgaatactaaagattgatttcgtcgaacaaactcttttgattttg-attttttgtgtggcag--------------
      | | ||||   || | |  |||||   |      ||||||||||||||||||| ||||||  |||  | ||||||||| ||||||||||||| || || || | |      | ||  |  || ||  |  |        |  |  ||||| || |   | | |  ||| | |||  |  |  ||               
CTCTATTCCCTTTTCCAAAATTATCGTTGATTGG-----AAGAAGATGAAGCTGAAGCAGTTAGAATCCTTCCTCGGTGATCTTCAACAGTTCTCCAACCCAAAGgtctctctcctttcatgttctctctgtttggttgctcagaaaattatcgaaaaaccaactgtaacattgcaatttgagcattccaaagcattctttgtct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116429478|gb|EG472070.1|EG472070
EST:     AGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCTAAA                         GTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTT
genomic: AGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCTAAAgtatgtgaaa ... tgtgtggcagGTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTT
EST: gi|124855221|gb|EH939658.1|EH939658
EST:     CAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCTAAA                         GTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTT
genomic: CAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCTAAAgtatgtgaaa ... tgtgtggcagGTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTT
EST: gi|19874619|gb|AU235450.1|AU235450
EST:     AGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCTAAA                         GTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTT
genomic: AGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCTAAAgtatgtgaaa ... tgtgtggcagGTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTT