1 5' 3' |
GCGGAGCGATTTGCGAGACGAGAGAGCACGATGCCTGATAGATTCAGATATTTGACCAAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGTTGgtacgtttctgcttacttttggcttcgttttagttaccgtgaatcataagtcttgtagcaaaatcaaatttttgttcttgttctcaatcgctgaagcatt...
species | Arabidopsis thaliana |
transcript | AT4G28210.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTGACCAAAGAAGCTCCAGATAGTCCAATTATATG-CCATGGTTTGTTG CGCTGGGGTTTCTCGTTTATGEST: gi|164050858|gb|ES212473.1|ES212473
genomic: TTTGACCAAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGTTGgtacgtttct ... tctgttgtagCGCTGGGGTTTCTCGTTTATG
EST: TTATATGGCCATGGTTTGTTG CGCTGGGGTTTCTCGTTTATGCGTGGAGAGCTGTTTTGTTTGAGCTATCCAEST: gi|125291234|gb|EL305319.1|EL305319
genomic: TTATATGGCCATGGTTTGTTGgtacgtttct ... tctgttgtagCGCTGGGGTTTCTCGTTTATGCGTGGAGAGCTGTTTTGTTTGAGCTATCCA
EST: CCAAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGTTG CGCTGGGGTTTCTCGTTTATGCGTGGAGAGCTGTTTTGTTTGTGCTATCCAEST: gi|164202126|gb|ES016868.1|ES016868
genomic: CCAAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGTTGgtacgtttct ... tctgttgtagCGCTGGGGTTTCTCGTTTATGCGTGGAGAGCTGTTTTGTTTGAGCTATCCA
EST: TTTGACCAAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGTTG CGCTGGGGTTTCTCGTTTATGCGTGGAGAGCTGTTTTGTTTGAGCTATC
genomic: TTTGACCAAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGTTGgtacgtttct ... tctgttgtagCGCTGGGGTTTCTCGTTTATGCGTGGAGAGCTGTTTTGTTTGAGCTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGAGCGATTTGCGAGACGAGAGAGCACGATGCCTGATAGATTCAGATATTTGACCAAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGTTGgtacgtttctgcttacttttggcttcgttttagttaccgtgaatcataagtcttgtagcaaaatcaaatttttgttcttgttctcaatcgctgaagcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcaatc