1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGGAAATTACGAAATAACCGCTTGTCTTCTCTATCGAGTCCAAAGTGGAGCTCTGCAAATCCTCGGGCAAGACGACGATTTGGAAAACGAAATTAGgttaagagtttagactaatctgaaaccgatattctttcaatttcaatattctagttcgatttcccaaaatcccctcttcggttattttggatcacag
species | Arabidopsis thaliana |
transcript | AT4G27120.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGAGCTCTGCAAATCCTCGGGCAAGACGACGATTTGGAAAACGAAATTAG GTAAACGATGGAGGAGATATTTGCTCTGATAGTCTCAATGATTCTCATAGTEST: gi|116474572|gb|EG517164.1|EG517164
genomic: GGAGCTCTGCAAATCCTCGGGCAAGACGACGATTTGGAAAACGAAATTAGgttaagagtt ... tggatcacagGTAAACGATGGAGGAGATATTTGCTCTGATAGTCTCAATGATTCTCATAGT
EST: GGAGCTCTGCAAATCCTCGGGCAAGACGACGATTTGGAAAACGAAATTAG GTAAACGATGGAGGAGATATTTGCTCTGATAGTCTCAATGATTCTCATAGTEST: gi|125116485|gb|EL166012.1|EL166012
genomic: GGAGCTCTGCAAATCCTCGGGCAAGACGACGATTTGGAAAACGAAATTAGgttaagagtt ... tggatcacagGTAAACGATGGAGGAGATATTTGCTCTGATAGTCTCAATGATTCTCATAGT
EST: ATCCTCGGGCAAGACGACGATTTGGAAAACGAAATTAG GTAAACGATGGAGGAAGATATTTGCTCTGATAGTCTCAA
genomic: ATCCTCGGGCAAGACGACGATTTGGAAAACGAAATTAGgttaagagtt ... tggatcacagGTAAACGATGGAGGA-GATATTTGCTCTGATAGTCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAAATTACGAAATAACCGCTTGTCTTCTCTATCGAGTCCAAAGTGGAGCTCTGCAAATCCTCGGGCAAGACGACGATTTGGAAAACGAAATTAGgttaagagtttagactaatctgaaaccgatattctttcaatttcaatattctagttcgatttcccaaaatcccctcttcggttattttggatcacag
- - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA