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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGATTAGAGCTCTCTGCTTCGAAGAGTTTTGTCTCAAAGAAATGGACTTTATTTCTCTGTATCGGTTTCTTCTGCGCAGGAATTCTCTTCTCCGACAGgtaacaaaacaatgctctctaatgaactcacttattcttttcttatttcttcagttatacgattttcccgggaattttttttatctcttttaggactgtc...

Basic information

species Arabidopsis thaliana
transcript AT4G26940.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86052773|gb|DR348530.1|DR348530
EST:     TTATTTCTCTGTATCGGTTTCTTCTGCGCAGGAATTCTCTTCTCCGACAG                         AATGTGGCCAGAGCCTGAATCCAATGTTGTATCAAGGGACACAGTAGCATC
genomic: TTATTTCTCTGTATCGGTTTCTTCTGCGCAGGAATTCTCTTCTCCGACAGgtaacaaaac ... ttgttaatagAATGTGGCCAGAGCCTGAATCCAATGTTGTATCAAGGGACACAGTAGCATC
EST: gi|116483920|gb|EG526512.1|EG526512
EST:     TTATTTCTCTGTATCGGTTTCTTCTGCGCAGGAATTCTCTTCTCCGACAG                         AATGTGGCCAGAGCCTGAATCCAATGTTGTATCAAGGGACACAGTAGCATC
genomic: TTATTTCTCTGTATCGGTTTCTTCTGCGCAGGAATTCTCTTCTCCGACAGgtaacaaaac ... ttgttaatagAATGTGGCCAGAGCCTGAATCCAATGTTGTATCAAGGGACACAGTAGCATC
EST: gi|116459773|gb|EG502365.1|EG502365
EST:     TTATTTCTCTGTATCGGTTTCTTCTGCGCAGGAATTCTCTTCTCCGACAG                         AATGTGGCCAGAGCCTGAATCCAATGTTGTATCAAGGGACACAGTAGCATC
genomic: TTATTTCTCTGTATCGGTTTCTTCTGCGCAGGAATTCTCTTCTCCGACAGgtaacaaaac ... ttgttaatagAATGTGGCCAGAGCCTGAATCCAATGTTGTATCAAGGGACACAGTAGCATC
EST: gi|116459771|gb|EG502363.1|EG502363
EST:     TTATTTCTCTGTATCGGTTTCTTCTGCGCAGGAATTCTCTTCTCCGACAG                         AATGTGGCCAGAGCCTGAATCCAATGTTGTATCAAGGGACACAGTAGCATC
genomic: TTATTTCTCTGTATCGGTTTCTTCTGCGCAGGAATTCTCTTCTCCGACAGgtaacaaaac ... ttgttaatagAATGTGGCCAGAGCCTGAATCCAATGTTGTATCAAGGGACACAGTAGCATC
EST: gi|125105050|gb|EL158934.1|EL158934
EST:     CTTCTCCGACAG                         AATGTGGCCAGAGCCTGAATCCAATGTTGTATCAAGGGACACAGTAGCATC
genomic: CTTCTCCGACAGgtaacaaaac ... ttgttaatagAATGTGGCCAGAGCCTGAATCCAATGTTGTATCAAGGGACACAGTAGCATC
EST: gi|86052774|gb|DR348531.1|DR348531
EST:     TTATTTCTCTGTATCGGTTTCTTCTGCGCAGGAATTCTCTTCTCCGACAG                         AATGTGGCCAGAGCCTGAATCCAATGTTGTATCAAGGGACACAGTAGCATC
genomic: TTATTTCTCTGTATCGGTTTCTTCTGCGCAGGAATTCTCTTCTCCGACAGgtaacaaaac ... ttgttaatagAATGTGGCCAGAGCCTGAATCCAATGTTGTATCAAGGGACACAGTAGCATC