Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAACCGGACGGAGAACCTTTCACGATGTCTGCAAACCAGGAGGAAGACAAGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctctttctccttctcatccttgtgtgttcttgtgaatgtttgggtttctgatttcgtgtagctgcgattagggtttttcattctccaatttggt...

Basic information

species Arabidopsis thaliana
transcript AT4G26840.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86022383|gb|DR318136.1|DR318136
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022401|gb|DR318154.1|DR318154
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022413|gb|DR318166.1|DR318166
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022378|gb|DR318131.1|DR318131
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|164007592|gb|ES097682.1|ES097682
EST:     AGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|125217152|gb|EL231235.1|EL231235
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAG
EST: gi|86022408|gb|DR318161.1|DR318161
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGNCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86078728|gb|DR374485.1|DR374485
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022389|gb|DR318142.1|DR318142
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022409|gb|DR318162.1|DR318162
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|116468434|gb|EG511026.1|EG511026
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022416|gb|DR318169.1|DR318169
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|301501469|gb|HO207009.1|HO207009
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022400|gb|DR318153.1|DR318153
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022412|gb|DR318165.1|DR318165
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022375|gb|DR318128.1|DR318128
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022380|gb|DR318133.1|DR318133
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022387|gb|DR318140.1|DR318140
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022406|gb|DR318159.1|DR318159
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTMTAGGATCAAGAGAAGCACTCAGCTCAAGAA
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTT-TAGGATCAAGAGAAGCACTCAGCTCAAGAA
EST: gi|116467938|gb|EG510530.1|EG510530
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022371|gb|DR318124.1|DR318124
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022382|gb|DR318135.1|DR318135
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022402|gb|DR318155.1|DR318155
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022398|gb|DR318151.1|DR318151
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022390|gb|DR318143.1|DR318143
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022374|gb|DR318127.1|DR318127
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022379|gb|DR318132.1|DR318132
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022396|gb|DR318149.1|DR318149
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGNCAAGGGACAG                         GATGGAAATGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022394|gb|DR318147.1|DR318147
EST:     AGA-GCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATC
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATC
EST: gi|86022376|gb|DR318129.1|DR318129
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAATGAGGTTTTNTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022403|gb|DR318156.1|DR318156
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGMAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022399|gb|DR318152.1|DR318152
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|163994423|gb|ES030663.1|ES030663
EST:     GAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAAGGGACAG                         GATGGAGACGAGGTTTTCTTTAGGATCA
genomic: GAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAA-GGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCA
EST: gi|47832237|gb|CK121921.1|CK121921
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022388|gb|DR318141.1|DR318141
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|125322821|gb|EL336906.1|EL336906
EST:     TCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: TCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022415|gb|DR318168.1|DR318168
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022385|gb|DR318138.1|DR318138
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022405|gb|DR318158.1|DR318158
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|47828148|gb|CK117832.1|CK117832
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022373|gb|DR318126.1|DR318126
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022392|gb|DR318145.1|DR318145
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|47832100|gb|CK121784.1|CK121784
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022395|gb|DR318148.1|DR318148
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022407|gb|DR318160.1|DR318160
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|47828098|gb|CK117782.1|CK117782
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022397|gb|DR318150.1|DR318150
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GAAGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022377|gb|DR318130.1|DR318130
EST:     AGAAGCCAGGAGACGGAGGAGCTCASATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|47831245|gb|CK120929.1|CK120929
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86068459|gb|DR364216.1|DR364216
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022393|gb|DR318146.1|DR318146
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|125252281|gb|EL266366.1|EL266366
EST:     ATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: ATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022384|gb|DR318137.1|DR318137
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|124950304|gb|EL025778.1|EL025778
EST:     TCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGA-G
genomic: TCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022391|gb|DR318144.1|DR318144
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022414|gb|DR318167.1|DR318167
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|124939356|gb|EL015903.1|EL015903
EST:     TCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: TCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022411|gb|DR318164.1|DR318164
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|125125705|gb|EL171140.1|EL171140
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGG
EST: gi|86022410|gb|DR318163.1|DR318163
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022404|gb|DR318157.1|DR318157
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
EST: gi|86022372|gb|DR318125.1|DR318125
EST:     AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAG                         GATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG
genomic: AGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctct ... tgttttatagGATGGAAACGAGGTTTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAACCGGACGGAGAACCTTTCACGATGTCTGCAAACCAGGAGGAAGACAAGAAGCCAGGAGACGGAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGgtatctctctttctccttctcatccttgtgtgttcttgtgaatgtttgggtttctgatttcgtgtagctgcgattagggtttttcattctccaatttggt

- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattctcc