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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGCTAGAACCATCTCCGGTTATCCAAATACCGGAATCGATTTAGCGAAACCCACCAATCGGCCTCCGATGGCTGGCTCCTATGGTTACATGGCTCCAGgtaagcttgagaaagtacttgtacacttaactaagtttggagttttgattttgatttgttttgtttgttgggttttacag

Basic information

species Arabidopsis thaliana
transcript AT4G26540.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26540.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA14G01520.1 (Glycine max), 5'ss of exon 1
-TTAGC-TAG-AACCATCTCCGGTTATCCAAATACCGGAATCGATTTAGCGAAACCCACCAATCGGCCTCCGATGGCTGGCTCCTATGGTTACATGGCTCCAGgtaagcttgagaaagtacttgtacacttaactaagtttggagttttga-------ttttgatttgttttgtttgttgggttttacag-----------
 || || ||| ||  ||  |  || |      |      |   |||  |   | ||     |  | ||     | |||||||||||||| ||||||||||||||||   ||   | | ||  | || | |||  ||  |||      |||         ||  | | ||  |  || || | | ||   |           
TTTGGCCTAGCAAGAATTGCAAGTGAAAATGGTGATTATACTAATTCCG---AGCCAGTTCAAAGACCCTACCTTGCTGGCTCCTATGGATACATGGCTCCAGgtacttttttcacactaagt-tagaattagttatttttcagtacttgcataaccccttgaaatagtactaattttttgttgttttggtatatgtacag