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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCTAACCTCTCATCCACCTTTTCTCCTTTAAGCATATTTCATTTCATCTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttgtttctcttttctctattgatgtacccttttgcccatatttgtgcttgtgaactcgcatttgatcgtttatgctagatctggtttgggttt...

Basic information

species Arabidopsis thaliana
transcript AT4G25030.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86032141|gb|DR327894.1|DR327894
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032126|gb|DR327879.1|DR327879
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|301501095|gb|HO206635.1|HO206635
EST:     CACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032137|gb|DR327890.1|DR327890
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|301501844|gb|HO207384.1|HO207384
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032134|gb|DR327887.1|DR327887
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032148|gb|DR327901.1|DR327901
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTSCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|19875699|gb|AU236530.1|AU236530
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032143|gb|DR327896.1|DR327896
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032125|gb|DR327878.1|DR327878
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032146|gb|DR327899.1|DR327899
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032149|gb|DR327902.1|DR327902
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032133|gb|DR327886.1|DR327886
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032144|gb|DR327897.1|DR327897
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032130|gb|DR327883.1|DR327883
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032150|gb|DR327903.1|DR327903
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032147|gb|DR327900.1|DR327900
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032129|gb|DR327882.1|DR327882
EST:     ACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: ACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032124|gb|DR327877.1|DR327877
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032138|gb|DR327891.1|DR327891
EST:     CTCCGAAAGGAATTGTATCGTTCCTCASACACGSCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATCTGTACTGGAGAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAAT-TGTACTGGAGAA
EST: gi|86032132|gb|DR327885.1|DR327885
EST:     CTCCGAAAGGAATCGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032136|gb|DR327889.1|DR327889
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGNCCTTTTTTCAGCTCAACAAGAATGGATAATTGNACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032127|gb|DR327880.1|DR327880
EST:     AAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: AAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032142|gb|DR327895.1|DR327895
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|301501084|gb|HO206624.1|HO206624
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032145|gb|DR327898.1|DR327898
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
EST: gi|86032139|gb|DR327892.1|DR327892
EST:     CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCC                         ATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA
genomic: CTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttg ... ttttgttcagATTCTTGTCCTTTTTTCAGCTCAACAAGAATGGATAATTGTACTGGAGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCACCTAACCTCTCATCCACCTTTTCTCCTTTAAGCATATTTCATTTCATCTCCGAAAGGAATTGTATCGTTCCTCACACACGCCTCTCATCTCTTATCCgtaagttttgtttctcttttctctattgatgtacccttttgcccatatttgtgcttgtgaactcgcatttgatcgtttatgctagatctggtttgggttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttttctc