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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCGAGGCTCAGAGGACCTGAGGCACGCAAGTGGTTCGCAAAGCAGCTAATGTTACCTGAATGGATGATCGACGTCCCTGATAATTTAAGCCAAGATTGgtactgcttctttctcattcttaatccgttgttgctgcttctcttccttcataaatggctgattatgagaattggttggttttttag

Basic information

species Arabidopsis thaliana
transcript AT4G24880.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86036461|gb|DR332214.1|DR332214
EST:     ATGTTACCTGAATGGATGATCGACGTCCCTGATAATTTAAGCCAAGATTG                         GTATGTGTTAGCAAGACCAGCTGGGAAAAGATGTTTTGTAGTTTCATCTGA
genomic: ATGTTACCTGAATGGATGATCGACGTCCCTGATAATTTAAGCCAAGATTGgtactgcttc ... ggttttttagGTATGTGTTAGCAAGACCAGCTGGGAAAAGATGTTTTGTAGTTTCATCTGA
EST: gi|86036458|gb|DR332211.1|DR332211
EST:     ATGTTACCTGAATGGATGATCGACGTCCCTGATAATTTAAGCCAAGATTG                         GTATGTGTTAGCAAGACC-G--GG-AAAAGATGTTTTGTAGTTTCATCTGA
genomic: ATGTTACCTGAATGGATGATCGACGTCCCTGATAATTTAAGCCAAGATTGgtactgcttc ... ggttttttagGTATGTGTTAGCAAGACCAGCTGGGAAAAGATGTTTTGTAGTTTCATCTGA
EST: gi|86036459|gb|DR332212.1|DR332212
EST:     ATGTTACCTGAATGGATGATCGACGTCCCTGATAATTTAAGCCAAGATTG                         GTATGTGTTAGCAAGACCAGCTGGGAAAAGATGTTTTGTAGTTTCATCTGA
genomic: ATGTTACCTGAATGGATGATCGACGTCCCTGATAATTTAAGCCAAGATTGgtactgcttc ... ggttttttagGTATGTGTTAGCAAGACCAGCTGGGAAAAGATGTTTTGTAGTTTCATCTGA