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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGACTGAGAGAACCAAGGCTCCGATCTAACAATGAGGAAGAGGACGCTCGTGTCCGTTTTGTTCCTTTTCTCGCTTCTGTTTCTTCTTCCAGATCAAGgtacgtttcgatgtatatatgtgttgattttgagtagatagatataagtgttgcttaggattcatatgctgatgatggcgatatttctgtggtgtttatcatag

Basic information

species Arabidopsis thaliana
transcript AT4G24190.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152033901|gb|BP819516.2|BP819516
EST:     CGTGTCCGTTTGGTTCCTTTTCTCGCTTCTGTTTCTTCTTCCAGATCAAG                         GAAGAAAGTTACACGCGAATGCAGAAGAGAGTTCCGATGATGTTACAGATC
genomic: CGTGTCCGTTTTGTTCCTTTTCTCGCTTCTGTTTCTTCTTCCAGATCAAGgtacgtttcg ... tttatcatagGAAGAAAGTTACACGCGAATGCAGAAGAGAGTTCCGATGATGTTACAGATC
EST: gi|164142123|gb|EL978623.1|EL978623
EST:     CGTGTCCGTTTTGTTCCTTTTCTCGCTTCTGTTTCTTCTTCCAGATCAAG                         GAAGAAAGTTACACGCGAATGCAGAAGAGAGTTCCGA
genomic: CGTGTCCGTTTTGTTCCTTTTCTCGCTTCTGTTTCTTCTTCCAGATCAAGgtacgtttcg ... tttatcatagGAAGAAAGTTACACGCGAATGCAGAAGAGAGTTCCGA
EST: gi|152034362|gb|BP826264.2|BP826264
EST:     CGTGTCGGTTTTGTTCCTTTTCTCGCTTCTGTTTCTTCTTCCAGATCAAG                         GAAGAAAGTTACACGCGAATGCAGAAGAGAGTT-CGATGATGTTACAGATC
genomic: CGTGTCCGTTTTGTTCCTTTTCTCGCTTCTGTTTCTTCTTCCAGATCAAGgtacgtttcg ... tttatcatagGAAGAAAGTTACACGCGAATGCAGAAGAGAGTTCCGATGATGTTACAGATC
EST: gi|164164071|gb|ES017954.1|ES017954
EST:     CGTGTCCGTTTTGTTCCTTTTCTCGCTTCTGTTTCTTCTTCCAGATCAAG                         GAAGAAAGTTACACGCGAATGCAGAAGAGAGTTCCGATGATGTTAC
genomic: CGTGTCCGTTTTGTTCCTTTTCTCGCTTCTGTTTCTTCTTCCAGATCAAGgtacgtttcg ... tttatcatagGAAGAAAGTTACACGCGAATGCAGAAGAGAGTTCCGATGATGTTAC
EST: gi|163987108|gb|ES034502.1|ES034502
EST:     TTCCTTTTCTCGCTTCTGTTTCTTCTTCCAGATCAAG                         GAAGAAAGTTACACGCGAATGCAGAAGAGAGTTCCGA
genomic: TTCCTTTTCTCGCTTCTGTTTCTTCTTCCAGATCAAGgtacgtttcg ... tttatcatagGAAGAAAGTTACACGCGAATGCAGAAGAGAGTTCCGA
EST: gi|116483054|gb|EG525646.1|EG525646
EST:     CGTGTCCGTTTTGTTCCTTTTCTCGCTTCTGTTTCTTCTTCCAGATCAAG                         GAAGAAAGTTACACGCGAATGCAGAAGAGAGTTCCGATGATGTTACAGATC
genomic: CGTGTCCGTTTTGTTCCTTTTCTCGCTTCTGTTTCTTCTTCCAGATCAAGgtacgtttcg ... tttatcatagGAAGAAAGTTACACGCGAATGCAGAAGAGAGTTCCGATGATGTTACAGATC
EST: gi|124788645|gb|EH878324.1|EH878324
EST:     CGCTTCTGTTTCTTCTTCCAGATCAAG                         GAAGAAAGTTACACGCGAATGCAGAAGAGAGTTCCGATGATGTTACAAGAT
genomic: CGCTTCTGTTTCTTCTTCCAGATCAAGgtacgtttcg ... tttatcatagGAAGAAAGTTACACGCGAATGCAGAAGAGAGTTCCGATGATGTTACA-GAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGACTGAGAGAACCAAGGCTCCGATCTAACAATGAGGAAGAGGACGCTCGTGTCCGTTTTGTTCCTTTTCTCGCTTCTGTTTCTTCTTCCAGATCAAGgtacgtttcgatgtatatatgtgttgattttgagtagatagatataagtgttgcttaggattcatatgctgatgatggcgatatttctgtggtgtttatcatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA