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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTATATACCTCCGGGAGTGTATTTGACGGAGAGCTTCAATCTCACTAGCCATATGACTCTTTACTTAGCTAAAGGTGCTGTGATTAGAGCTGTTCAGgtaaaatttcaaattttctggtttatcactgtgaattttgaattatgaaattggattggtatgagatgatttgaaatgagtaatgagtgacgaattcgtt...

Basic information

species Arabidopsis thaliana
transcript AT4G23820.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084136|gb|DR379895.1|DR379895
EST:     GCCATATGACTCTTTACTTAGCTAAAGGTGCTGTGATTAGAGCTGTTCAG                         GATACCTGGAATTGGCCATTGATTGATCCTTTGCCGTCTTATGGAAGAGG
genomic: GCCATATGACTCTTTACTTAGCTAAAGGTGCTGTGATTAGAGCTGTTCAGgtaaaatttc ... ttgacttcagGATACCTGGAATTGGCCATTGATTGATCCTTTGCCGTCTTATGGAAGAGG
EST: gi|116421725|gb|EG464317.1|EG464317
EST:     GCCATATGACTCTTTACTTAGCTAAAGGTGCTGTGATTAGAGCTGTTCAG                         GATACCTGGAATTGGCCATTGATTGATCCTTTGCCGTCTTATGGAAGAGGG
genomic: GCCATATGACTCTTTACTTAGCTAAAGGTGCTGTGATTAGAGCTGTTCAGgtaaaatttc ... ttgacttcagGATACCTGGAATTGGCCATTGATTGATCCTTTGCCGTCTTATGGAAGAGGG
EST: gi|124933502|gb|EL010654.1|EL010654
EST:     GCCATATGACTCTTTACTTAGCTAAAGGTGCTGTGATTAGAGCTGTTCAG                         GATACCTGGAAT
genomic: GCCATATGACTCTTTACTTAGCTAAAGGTGCTGTGATTAGAGCTGTTCAGgtaaaatttc ... ttgacttcagGATACCTGGAAT
EST: gi|125205805|gb|EL220759.1|EL220759
EST:     CTGTGATTAGAGCTGTTCAG                         GATACCTGGAATTGGCCATTGATTGATCCTTTGCCGTCTTATGGAAGAGGG
genomic: CTGTGATTAGAGCTGTTCAGgtaaaatttc ... ttgacttcagGATACCTGGAATTGGCCATTGATTGATCCTTTGCCGTCTTATGGAAGAGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGTATATACCTCCGGGAGTGTATTTGACGGAGAGCTTCAATCTCACTAGCCATATGACTCTTTACTTAGCTAAAGGTGCTGTGATTAGAGCTGTTCAGgtaaaatttcaaattttctggtttatcactgtgaattttgaattatgaaattggattggtatgagatgatttgaaatgagtaatgagtgacgaattcgtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT