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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTTGAGGTTTGCACTCAAGACGGTAGCGTTGATCGTCACGGCAATCCAGCTATCCGAGCTAATACCGGCAAATGGCTCACTGCTATTCTCATTCTAGgtaatgattctctctctctttctctctatatataccactgttctttgtcttaaagtgttgtgttttggattctaaagaaatgggtttttggttgatatag

Basic information

species Arabidopsis thaliana
transcript AT4G21680.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116451777|gb|EG494369.1|EG494369
EST:     AGCTATCCGAGCTAATACCGGCAAATGGCTCACTGCTATTCTCATTCTAG                         TGAATCAAGGACTAGCTACGCTTGCGTTCTTCGGTGTAGGAGTGAATTTGG
genomic: AGCTATCCGAGCTAATACCGGCAAATGGCTCACTGCTATTCTCATTCTAGgtaatgattc ... gttgatatagTGAATCAAGGACTAGCTACGCTTGCGTTCTTCGGTGTAGGAGTGAATTTGG
EST: gi|19878161|gb|AU238992.1|AU238992
EST:     AGCTATCCGAGCTAATACCGGCAAATGGCTCACTGCTATTCTCATTCTAG                         TGAATCAAGGACTAGCTACGCTTGCGTTCTTCGGTGTAGGAGTGAATTTGG
genomic: AGCTATCCGAGCTAATACCGGCAAATGGCTCACTGCTATTCTCATTCTAGgtaatgattc ... gttgatatagTGAATCAAGGACTAGCTACGCTTGCGTTCTTCGGTGTAGGAGTGAATTTGG
EST: gi|125258940|gb|EL273025.1|EL273025
EST:     TGGCTCACTGCTATTCTCATTCTAG                         TGAATCAAGGACTAGCTACGCTTGCGTTCTTCGGTGTAGGAGTGAATTTGG
genomic: TGGCTCACTGCTATTCTCATTCTAGgtaatgattc ... gttgatatagTGAATCAAGGACTAGCTACGCTTGCGTTCTTCGGTGTAGGAGTGAATTTGG