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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTTCTTCGCCACGTACGAACCCTAAATCCTCTTTTACTCATTTTCCTCCATCTTCGAGCTCCCCAAAAACCTCTGCTTTTGTCGAACCTTTCAAAAAgtaataacctttctcttctctgtgttcatttttgattcgtcgattcttcgttatatcacctggagaaaatgtttctgtttccagatgtttagattcttggcttattttgtttgcactcattttag

Basic information

species Arabidopsis thaliana
transcript AT4G21090.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874920|gb|AU235751.1|AU235751
EST:     CCATCTTCGAGCTCCCCAAAAACCTCTGCTTTTGTCGAACCTTTCAAAAA                         GTTTAATTTTGAATTGCTTCGAGGTTTAAAGCTTATACCTTTGGACGGCGC
genomic: CCATCTTCGAGCTCCCCAAAAACCTCTGCTTTTGTCGAACCTTTCAAAAAgtaataacct ... ctcattttagGTTTAATTTTGAATTGCTTCGAGGTTTAAAGCTTATACCTTTGGACGGCGC
EST: gi|125189402|gb|EL204356.1|EL204356
EST:     CCATCTTCGAGCTCCCCAAAAACCTCTGCTTTTGTCGAACCTTTCAAAAA                         GTTTTAATTTTGAATTGCTTCGAG
genomic: CCATCTTCGAGCTCCCCAAAAACCTCTGCTTTTGTCGAACCTTTCAAAAAgtaataacct ... ctcattttagGTTT-AATTTTGAATTGCTTCGAG
EST: gi|164205403|gb|ES206654.1|ES206654
EST:     CCATCTTCGAGCTCCCCAAAAACCTCTGCTTTTGTCGAACCTTTCAAAAA                         GTTTAATTTTGAATTGCTTCGAGGTTTAAAGCTTATACCTTTGGACGG
genomic: CCATCTTCGAGCTCCCCAAAAACCTCTGCTTTTGTCGAACCTTTCAAAAAgtaataacct ... ctcattttagGTTTAATTTTGAATTGCTTCGAGGTTTAAAGCTTATACCTTTGGACGG