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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCTATTGTCTATCTCCTCAATTTGGATTGGATTTTCTGCATATCATCGCTCTAGCTTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATCGgtaagaacaagctccaaagtttgttcctttttttcaattttcgccaattctgtaatctcatcattgtccttgtttgtttgtttgattcaacacacaattcttgttttgatttggatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G20380.6
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502089|gb|HO207629.1|HO207629
EST:     GCTCTAGCTTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATCG                         AAGTTTTTGGCTTTGAATTGGATTTGGGTTTCGTTCCAAAATCAGCTCTTT
genomic: GCTCTAGCTTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATCGgtaagaacaa ... ttggatgcagAAGTTTTTGGCTTTGAATTGGATTTGGGTTTCGTTCCAAAATCAGCTCTTT
EST: gi|164077642|gb|ES046682.1|ES046682
EST:     GCTCTAGATTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATCG                         AAGTTTTTGGCTTTGAATTGGATTTGGGTTTCGTTCCAAAATCAGCTCTTT
genomic: GCTCTAGCTTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATCGgtaagaacaa ... ttggatgcagAAGTTTTTGGCTTTGAATTGGATTTGGGTTTCGTTCCAAAATCAGCTCTTT
EST: gi|47830281|gb|CK119965.1|CK119965
EST:     GCTCTAGATTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATCG                         AAGTTTTTGGCTTTGAATTGGATTTGGGTTTCGTTCCAAAATCAGCTCTTT
genomic: GCTCTAGCTTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATCGgtaagaacaa ... ttggatgcagAAGTTTTTGGCTTTGAATTGGATTTGGGTTTCGTTCCAAAATCAGCTCTTT