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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCTATTGTCTATCTCCTCAATTTGGATTGGATTTTCTGCATATCATCGCTCTAGCTTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATCGgtaagaacaagctccaaagtttgttcctttttttcaattttcgccaattctgtaatctcatcattgtccttgtttgtttgtttgattcaacacacaattcttgttttgatttggatgcagaag

Basic information

species Arabidopsis thaliana
transcript AT4G20380.5
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502089|gb|HO207629.1|HO207629
EST:     GCTCTAGCTTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATCGAAG                       
genomic: GCTCTAGCTTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATC---Ggtaagaacaa ... gatgcaga
EST: gi|47830281|gb|CK119965.1|CK119965
EST:     GCTCTAGATTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATCGAAG                       
genomic: GCTCTAGCTTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATC---Ggtaagaacaa ... gatgcaga
EST: gi|152037987|gb|BP804959.2|BP804959
EST:     GCTCTAGCTTTCGCGGGTTTGGGATTCGATTCCTTACCCTTCTCCAATCG                         TTTTTGGCTTTGAATTGGATTTGGGTTTCGTTCCAAAATCAGCTCTTTTTG
genomic: GCTCTAGCTTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATCGgtaagaacaa ... gatgcagaagTTTTTGGCTTTGAATTGGATTTGGGTTTCGTTCCAAAATCAGCTCTTTTTG