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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGAATATTGTACACCAACTGTTCGATGAAATGTCTTACAGAGATTTCGTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACGgtatgctacctaattggtgttaagggttgtcgtaatcttcaatcttttctcgcctagctctcgttttaggcttttgtaaagtttacttcagttttaggaaagagtatcgtcttctatgagtttgatatagcttgtacttggctcggctgaattatggctctttaacccttccttgggacttttgtcttattggtgtcag

Basic information

species Arabidopsis thaliana
transcript AT4G20325.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116459192|gb|EG501784.1|EG501784
EST:     GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACG                         AATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTACTGTTT
genomic: GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACGgtatgctacc ... ttggtgtcagAATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTACTGTTT
EST: gi|116411163|gb|EG453755.1|EG453755
EST:     GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACG                         AATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTACTGTTT
genomic: GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACGgtatgctacc ... ttggtgtcagAATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTACTGTTT
EST: gi|116459202|gb|EG501794.1|EG501794
EST:     GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACG                         AATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTACTGTTT
genomic: GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACGgtatgctacc ... ttggtgtcagAATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTACTGTTT
EST: gi|116411162|gb|EG453754.1|EG453754
EST:     GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACG                         AATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTACTGTTT
genomic: GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACGgtatgctacc ... ttggtgtcagAATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTACTGTTT
EST: gi|116411166|gb|EG453758.1|EG453758
EST:     GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACG                         AATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTACTGTTT
genomic: GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACGgtatgctacc ... ttggtgtcagAATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTACTGTTT
EST: gi|116411176|gb|EG453768.1|EG453768
EST:     GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACG                         AATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTGCTGTTT
genomic: GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACGgtatgctacc ... ttggtgtcagAATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTACTGTTT
EST: gi|116459198|gb|EG501790.1|EG501790
EST:     GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACG                         AATTCGTAGAAATTTAGGTTTGCTGAAGCTTGAAGATGAGTTCTACTGTTT
genomic: GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACGgtatgctacc ... ttggtgtcagAATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTACTGTTT
EST: gi|116459190|gb|EG501782.1|EG501782
EST:     GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACG                         AATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTACTGTTT
genomic: GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACGgtatgctacc ... ttggtgtcagAATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTACTGTTT
EST: gi|116411164|gb|EG453756.1|EG453756
EST:     GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACG                         AATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTACTGTTT
genomic: GTCCTGATTCATTTACCTCACTAATTGCGAGCCTTCTTGCCGTCGTCACGgtatgctacc ... ttggtgtcagAATTCGTAGAAATTTAGGTTTGCTAAAGCTTGAAGATGAGTTCTACTGTTT