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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTTTGGTTTTGCAGTTTGTTTAGATGGAAGTCCACCAGCTTATCATTTGGATAGAGGTTCTGGAACTGGAATCAATAGTTGGTTGATACAGCTTGAGgttttgctctgctttcttctcttgtgttctgtggttgttcttgctttggcttagtatatttttggagttgggagatgattttgaaatgaagtttttgtggaagttaattgagtgtctttggaaatggtttgatttag

Basic information

species Arabidopsis thaliana
transcript AT4G19420.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G19420.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA09G35050.1 (Glycine max), 5'ss of exon 3
GTCTTTTGGTTTTGCAGTTTGTTTAGATGGAAGTCCACCAGCTTATCATTTGGATAGAGGTTCTGGAACTGGAATCAATAGTTGGTTGATACAGCTTGAGgttttgctctgctttcttctcttgtgttctgtggttgttcttgc---tttggcttagtatatttttggagttgggagatgattttgaaatgaagtttttgtggaagttaattgagtgtctttggaaatggtttgatttag---------
                 ||||||| ||||| |||||||||||||||||||| ||||| || | |||| | || || || | ||||||| |     ||||||| |  | ||   | |     ||    || ||  ||  ||||     |     || ||  ||| ||    |||    |   ||||| |   ||   | |  ||    |  |  |  || |||     |  | |  || |          
-----------------TTTGTTTGGATGGGAGTCCACCAGCTTATCATTTTGATAGGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtatgccact--ctccacaaatttccatcagtaattagtcttataaatcaaatttggttcattgtt----ttgcctcacctttttgga-caaatcatataaggtttattttcaatcgtttttaatcttaatctatttcatttctactag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86031812|gb|DR327565.1|DR327565
EST:     TGGATAGAGGTTCTGGAACTGGAATCAATAGCTGGTTGATACAGCTTGAG                         GGAGGAGGATGGTGCAATAATGTAACAAATTGCGTTAGTCGGATGCATACT
genomic: TGGATAGAGGTTCTGGAACTGGAATCAATAGTTGGTTGATACAGCTTGAGgttttgctct ... tttgatttagGGAGGAGGATGGTGCAATAATGTAACAAATTGCGTTAGTCGGATGCATACT