1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGCTGAAACTGAGTCATCGTCCGAGTTAGCAAAGTGAAACTTCGAAGTTTCTCTTACACTAATCTCAGGTTTGGGATTTTGTAAGAAACCGCGTTTACAAgtaagtgcgtttgcgtctgaaactttctttccaagaaagatttattcttttcccagtttgcaaaagcaaaactgatcctttctcgttaattccttctacg...
species | Arabidopsis thaliana |
transcript | AT4G19420.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCTTACACTAATCTCAGGTTTGGGATTTTGTAAGAAACCGCGTTTACAA AATGTTCAAGTTGAAGCAATGGTTGATTTATTTGGTGTGTTCGTTAGTAATEST: gi|116448741|gb|EG491333.1|EG491333
genomic: CTCTTACACTAATCTCAGGTTTGGGATTTTGTAAGAAACCGCGTTTACAAgtaagtgcgt ... ctttcaccagAATGTTCAAGTTGAAGCAATGGTTGATTTATTTGGTGTGTTCGTTAGTAAT
EST: CTCTTACACTAATCTCAGGTTTGGGATTTTGTAAGAAACCGCGTTTACAA AATGTTCAAGTTGAAGCAATGGTTGATTTATTTGGTGTGTTCGTTAGTAATEST: gi|124959011|gb|EL033716.1|EL033716
genomic: CTCTTACACTAATCTCAGGTTTGGGATTTTGTAAGAAACCGCGTTTACAAgtaagtgcgt ... ctttcaccagAATGTTCAAGTTGAAGCAATGGTTGATTTATTTGGTGTGTTCGTTAGTAAT
EST: CCGCGTTTACAA AATGTTCAAGTTGAAGCAATGGTTGATTTATTTGGTGTGTTCGTTAGTAAT
genomic: CCGCGTTTACAAgtaagtgcgt ... ctttcaccagAATGTTCAAGTTGAAGCAATGGTTGATTTATTTGGTGTGTTCGTTAGTAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGAAACTGAGTCATCGTCCGAGTTAGCAAAGTGAAACTTCGAAGTTTCTCTTACACTAATCTCAGGTTTGGGATTTTGTAAGAAACCGCGTTTACAAgtaagtgcgtttgcgtctgaaactttctttccaagaaagatttattcttttcccagtttgcaaaagcaaaactgatcctttctcgttaattccttctacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccttct