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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCATATATATCCTTCTCCATTAGCTTTTGTTCTTCTGTTCCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttccttttgatcgcattttttttttatctttgatcttccgtattaaacgtgctcgatctatatactcaatgatcttatatgtgtatgatcatg...

Basic information

species Arabidopsis thaliana
transcript AT4G19200.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116485071|gb|EG527663.1|EG527663
EST:     GTTCCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCG                         GTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
genomic: GTTCCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttc ... aatattgtagGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
EST: gi|164212261|gb|ES166075.1|ES166075
EST:     GTTCCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCG                         GTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGC
genomic: GTTCCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttc ... aatattgtagGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGC
EST: gi|125213383|gb|EL228215.1|EL228215
EST:     AATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCG                         GTTTAAAGTAAAAAAGACAATGGGAGGTGGTAAAGACAAGCA
genomic: AATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttc ... aatattgtagGTTTAAAGTAAAAAAG-CAATGGGAGGTGGTAAAGACAAGCA
EST: gi|116485076|gb|EG527668.1|EG527668
EST:     TTCTGTTCCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCG                         GTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
genomic: TTCTGTTCCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttc ... aatattgtagGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
EST: gi|116485084|gb|EG527676.1|EG527676
EST:     AATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCG                         GTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
genomic: AATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttc ... aatattgtagGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
EST: gi|164110636|gb|ES047311.1|ES047311
EST:     GTTCCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCG                         GTTTAAAGTAAAAA-GCAATGGGAGGTGGTAAAGACAAGC
genomic: GTTCCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttc ... aatattgtagGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGC
EST: gi|124854016|gb|EH938453.1|EH938453
EST:     CCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCG                         GTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAA
genomic: CCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttc ... aatattgtagGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAA
EST: gi|116485080|gb|EG527672.1|EG527672
EST:     AATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCG                         GTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
genomic: AATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttc ... aatattgtagGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
EST: gi|116485073|gb|EG527665.1|EG527665
EST:     AATTCCTTCTGAAATATTCATCGCAATTCGTATCG                         GTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
genomic: AATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttc ... aatattgtagGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
EST: gi|125110252|gb|EL162300.1|EL162300
EST:     GTTCCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCG                         GTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCA
genomic: GTTCCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttc ... aatattgtagGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCA
EST: gi|116485067|gb|EG527659.1|EG527659
EST:     AATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCG                         GTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCGTCATGATTAG
genomic: AATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttc ... aatattgtagGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
EST: gi|124851941|gb|EH936378.1|EH936378
EST:     AATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCG                         GTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCA
genomic: AATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttc ... aatattgtagGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCA
EST: gi|116485072|gb|EG527664.1|EG527664
EST:     AATTCCTTCTGAAATATTCATCGCAATTCGTATCG                         GTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
genomic: AATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttc ... aatattgtagGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
EST: gi|116485087|gb|EG527679.1|EG527679
EST:     AATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCG                         GTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
genomic: AATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttc ... aatattgtagGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
EST: gi|116485083|gb|EG527675.1|EG527675
EST:     GTTCCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCG                         GTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
genomic: GTTCCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttc ... aatattgtagGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
EST: gi|116485090|gb|EG527682.1|EG527682
EST:     TTCTGTTCCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCG                         GTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG
genomic: TTCTGTTCCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttc ... aatattgtagGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCCATATATATCCTTCTCCATTAGCTTTTGTTCTTCTGTTCCAATTCCAATTCCTTCTGAAATATTCATCGCAATTCGTATCGgtaatttttccttttgatcgcattttttttttatctttgatcttccgtattaaacgtgctcgatctatatactcaatgatcttatatgtgtatgatcatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcgatct