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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGTTCTTCGTTGTGTTACTGGAAGTGAAAGTAATGGCGCTCTGTAACTTGAATCCAACTCAAGGGATATTCCCATTGCAAGGCTTATCAgtgagttactttattctctccatcaaatatttcagtcttgagataagattgtatatatgtattcagatgtgaattcttcaaattgcag

Basic information

species Arabidopsis thaliana
transcript AT4G18975.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164061930|gb|ES054285.1|ES054285
EST:     TCTGTAACTTGAATCCAACTCAAGGGATATTCCCATTGCAAGGCTTATCA                         AAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACG
genomic: TCTGTAACTTGAATCCAACTCAAGGGATATTCCCATTGCAAGGCTTATCAgtgagttact ... caaattgcagAAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACG
EST: gi|116393001|gb|EG435593.1|EG435593
EST:     GCAAGGCTTATCA                         AAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGTTGCGGA
genomic: GCAAGGCTTATCAgtgagttact ... caaattgcagAAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGTTGCGGA
EST: gi|116392999|gb|EG435591.1|EG435591
EST:     TCTGTAACTTGAATCCAACTCAAGGGATATTCCCATTGCAAGGCTTATCA                         AAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGTTGCGGA
genomic: TCTGTAACTTGAATCCAACTCAAGGGATATTCCCATTGCAAGGCTTATCAgtgagttact ... caaattgcagAAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGTTGCGGA