1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCTCTGAATCAATTTGGGGAAATCAAGAGGAGAAGTGACAATGGATGCGTTTAGAAGACAAGCGAGTAAGCTTAGAGACCAAGTCGCAAAGCAGCAACTGgtaattccttttcatcgccgcaactagtttcactgttaccgattcagcgaaacgaagctcaatttaggttctttgttgctaatttggattaaaaaaaatg...
species | Arabidopsis thaliana |
transcript | AT4G18060.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTAGAAGACAAGCGAGTAAGCTTAGAGACCAAGTCGCAAAGCAGCAACTG GCTGTGATAAAGCAATTCAGTGGGACTGGTTATGAAAGCTCAGATGTAATGEST: gi|164078875|gb|ES056499.1|ES056499
genomic: TTAGAAGACAAGCGAGTAAGCTTAGAGACCAAGTCGCAAAGCAGCAACTGgtaattcctt ... gggaatgtagGCTGTGATAAAGCAATTCAGTGGGACTGGTTATGAAAGCTCAGATGTAATG
EST: AGTAAGCTTAGAGATCAAGTCGCAAAGCAGCAACTG GCTGTGATAAAGCAATTCAGTGGGACTGGTTATGAAAGCTCAGATGTAATGEST: gi|86062573|gb|DR358330.1|DR358330
genomic: AGTAAGCTTAGAGACCAAGTCGCAAAGCAGCAACTGgtaattcctt ... gggaatgtagGCTGTGATAAAGCAATTCAGTGGGACTGGTTATGAAAGCTCAGATGTAATG
EST: TTAGAAGACAAGCGAGTAAGCTTAGAGACCAAGTCGCAAAGCAGCAACTG GCTGTGATAAAGCAATTCAGTGGGACTGGTTATGAAAGCTCAGATGTAATGEST: gi|86086852|gb|DR382611.1|DR382611
genomic: TTAGAAGACAAGCGAGTAAGCTTAGAGACCAAGTCGCAAAGCAGCAACTGgtaattcctt ... gggaatgtagGCTGTGATAAAGCAATTCAGTGGGACTGGTTATGAAAGCTCAGATGTAATG
EST: TTAGAAGACAAGCGAGTAAGCTTAGAGACCAAGTCGCAAAGCAGCAACTG GCTGTGATAAAGCAATTCAGTGGGACTGGTTATGAAAGCTCAGATGTAATG
genomic: TTAGAAGACAAGCGAGTAAGCTTAGAGACCAAGTCGCAAAGCAGCAACTGgtaattcctt ... gggaatgtagGCTGTGATAAAGCAATTCAGTGGGACTGGTTATGAAAGCTCAGATGTAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCTGAATCAATTTGGGGAAATCAAGAGGAGAAGTGACAATGGATGCGTTTAGAAGACAAGCGAGTAAGCTTAGAGACCAAGTCGCAAAGCAGCAACTGgtaattccttttcatcgccgcaactagtttcactgttaccgattcagcgaaacgaagctcaatttaggttctttgttgctaatttggattaaaaaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa