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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCCATCTATTTAAAGCACAAACCTAATTCGAAGAAAGAAGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttctcactattatctctctctcagatgtcgtttctgtattgttcattagattctagaagttaattaaggatgaaatgtgatttttgattacag

Basic information

species Arabidopsis thaliana
transcript AT4G17390.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86021787|gb|DR317540.1|DR317540
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164005909|gb|ES110683.1|ES110683
EST:     GACTAGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
genomic: GACT-GCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|86021781|gb|DR317534.1|DR317534
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|124990602|gb|EL062871.1|EL062871
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCGGTCGGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|116413476|gb|EG456068.1|EG456068
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|47828590|gb|CK118274.1|CK118274
EST:     AAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|152033817|gb|BP816755.2|BP816755
EST:     ACGCCGGAAAATCGCAATGG                         GTGCGTAAAAATACGTGTGGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: ACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164232984|gb|ES053256.1|ES053256
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|124926140|gb|EL004031.1|EL004031
EST:     TGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTG
genomic: TGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTG
EST: gi|86021792|gb|DR317545.1|DR317545
EST:     ACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: ACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|116413469|gb|EG456061.1|EG456061
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|116413465|gb|EG456057.1|EG456057
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164133453|gb|ES058224.1|ES058224
EST:     AGTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAG
genomic: AGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAG
EST: gi|125241252|gb|EL255337.1|EL255337
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGG
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGG
EST: gi|86021793|gb|DR317546.1|DR317546
EST:     AAGTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AAGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|116413464|gb|EG456056.1|EG456056
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021791|gb|DR317544.1|DR317544
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|125025364|gb|EL097633.1|EL097633
EST:     CCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: CCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|116413474|gb|EG456066.1|EG456066
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021794|gb|DR317547.1|DR317547
EST:     AAGTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AAGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|47830178|gb|CK119862.1|CK119862
EST:     CGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: CGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021780|gb|DR317533.1|DR317533
EST:     AGTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|116413466|gb|EG456058.1|EG456058
EST:     AAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164038433|gb|ES090630.1|ES090630
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|116413470|gb|EG456062.1|EG456062
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACTAATACGTGTCGGAGCTATGGAGGAAGAAGCAGCCGGATGTGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164024024|gb|ES017996.1|ES017996
EST:     ACTGCGACGCCGG-AAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
genomic: ACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|86021784|gb|DR317537.1|DR317537
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|47829380|gb|CK119064.1|CK119064
EST:     GGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021782|gb|DR317535.1|DR317535
EST:     AAGTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AAGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164227498|gb|EL985105.1|EL985105
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGG
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGG
EST: gi|116413473|gb|EG456065.1|EG456065
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|125299567|gb|EL313652.1|EL313652
EST:     GTGACTGCGACGCCGGAAAATCGC-ATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|116413460|gb|EG456052.1|EG456052
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021779|gb|DR317532.1|DR317532
EST:     AAGTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AAGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021783|gb|DR317536.1|DR317536
EST:     ACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: ACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164005389|gb|ES086923.1|ES086923
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGNGGAAGAAGCAGTCGGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|124902830|gb|EH976910.1|EH976910
EST:     AGTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021795|gb|DR317548.1|DR317548
EST:     ACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: ACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|125325417|gb|EL339497.1|EL339497
EST:     TGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGG
genomic: TGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGG
EST: gi|86021786|gb|DR317539.1|DR317539
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021788|gb|DR317541.1|DR317541
EST:     AAACCTAATTCGAAGAAAGAAGTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AAACCTAATTCGAAGAAAGAAGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|124715373|gb|EH806775.1|EH806775
EST:     GTGACTTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
genomic: GTGAC-TGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|125195028|gb|EL209982.1|EL209982
EST:     CGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: CGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|152033886|gb|BP819048.2|BP819048
EST:     ACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: ACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164021757|gb|ES074291.1|ES074291
EST:     ACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAG-AAGAAGCAGTCGGA
genomic: ACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|86021785|gb|DR317538.1|DR317538
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021790|gb|DR317543.1|DR317543
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164067032|gb|ES135771.1|ES135771
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAG
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAG
EST: gi|164105227|gb|ES166382.1|ES166382
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGTAGAAGCAGTCGGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGCCATCTATTTAAAGCACAAACCTAATTCGAAGAAAGAAGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttctcactattatctctctctcagatgtcgtttctgtattgttcattagattctagaagttaattaaggatgaaatgtgatttttgattacag

- - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - AGAAGT