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CGCTGGAAATGGAGCTCCATCGAAATCATTCGATTATGATTTGATCATTATCGGAGCTGGAGTTGGTGGCCATGGAGCTGCATTGCACGCCGTCGAGAAGgtcctctttcttcctcttattaattaggaagaattcaagttcgattatgattctatgctttgccaatactctggatcaaattgatagtggaatcatatgc...
species | Arabidopsis thaliana |
transcript | AT4G16155.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGGAGCTGGAGTTGGTGGCCATGGAGCTGCATTGCACGCCGTCGAGAAG GGACTCAAAACTGACTATCATTGAAGGAGATGTTGTTGGAEST: gi|86060709|gb|DR356466.1|DR356466
genomic: TCGGAGCTGGAGTTGGTGGCCATGGAGCTGCATTGCACGCCGTCGAGAAGgtcctctttc ... cgttgtatagGGACTCAAAACTG-CTATCATTGAAGGAGATGTTGTTGGA
EST: TCGGAGCTGGAGTTGGTGGCCATGGAGCTGCATTGCACGCCGTCGAGAAG GGACTCAAAACTGCTATCATTGAAGGAGATGTTGTTGGAGGTACTTGCGTTEST: gi|124997507|gb|EL069776.1|EL069776
genomic: TCGGAGCTGGAGTTGGTGGCCATGGAGCTGCATTGCACGCCGTCGAGAAGgtcctctttc ... cgttgtatagGGACTCAAAACTGCTATCATTGAAGGAGATGTTGTTGGAGGTACTTGCGTT
EST: TCGGAGCTGGAGTTGGTGGCCATGGAGCTGCATTGCACGCCGTCGAGAAG GGACTCAAAACTGCTATCATTGAAGGAG
genomic: TCGGAGCTGGAGTTGGTGGCCATGGAGCTGCATTGCACGCCGTCGAGAAGgtcctctttc ... cgttgtatagGGACTCAAAACTGCTATCATTGAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTGGAAATGGAGCTCCATCGAAATCATTCGATTATGATTTGATCATTATCGGAGCTGGAGTTGGTGGCCATGGAGCTGCATTGCACGCCGTCGAGAAGgtcctctttcttcctcttattaattaggaagaattcaagttcgattatgattctatgctttgccaatactctggatcaaattgatagtggaatcatatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaat