1 5' 3' | 2 5' 3' | 3 5' 3' |
TTGAAGAAAGATAGGGTTTAGATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctcgatccgaaaccctagcttttgttggtaaattggaagaagaaataacctaattagcttcttctacctttgattctctgtctgtttaattta...
species | Arabidopsis thaliana |
transcript | AT4G14342.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|86025225|gb|DR320978.1|DR320978
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|47828971|gb|CK118655.1|CK118655
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|86025228|gb|DR320981.1|DR320981
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|86025223|gb|DR320976.1|DR320976
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|86025236|gb|DR320989.1|DR320989
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCWAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|86025218|gb|DR320971.1|DR320971
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|86025217|gb|DR320970.1|DR320970
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|86025230|gb|DR320983.1|DR320983
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|86025215|gb|DR320968.1|DR320968
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|86025220|gb|DR320973.1|DR320973
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGSTTGAGCATCTTCAAGCTAAAEST: gi|86025231|gb|DR320984.1|DR320984
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|86025222|gb|DR320975.1|DR320975
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|86025234|gb|DR320987.1|DR320987
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|86025229|gb|DR320982.1|DR320982
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCWAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|86025232|gb|DR320985.1|DR320985
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|86025233|gb|DR320986.1|DR320986
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|86025226|gb|DR320979.1|DR320979
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: AGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAAEST: gi|86025221|gb|DR320974.1|DR320974
genomic: AGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
EST: CTTCTTCTTCTAGTTGCTGCGAAACTCTGAAAAAGATGCAG GCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
genomic: CTTCTTCTTCTAGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctc ... tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAAGAAAGATAGGGTTTAGATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAGTTGCTGCGAAACTCTGAAAAAGATGCAGgtatgttctcgatccgaaaccctagcttttgttggtaaattggaagaagaaataacctaattagcttcttctacctttgattctctgtctgtttaattta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctcgatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctgtc