1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAAGGATGTTGCAAGTACGGTGGTCCTGGTTACGCGACTCCTCTCGCCGCTATGTCTGGTCCATCGGAGAAACTTATCTACGTAACCGCCGTCTACACCGgtacacatttgatttgatttgtcataaatttctactgttttagaatccagatcgaatcttcacggaatcttgaatattccaaatcgaatcttgattctgatatctttttggctttgaag
species | Arabidopsis thaliana |
transcript | AT4G14030.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TATGTCTGGTCCATCGGAGAAACTTATCTACGTCACCGCCGTCTACACCG GAACTGGAATAGATAAACCGGATTATTTGGCGACGGTGGATGTAGATCCAAEST: gi|125305443|gb|EL319528.1|EL319528
genomic: TATGTCTGGTCCATCGGAGAAACTTATCTACGTAACCGCCGTCTACACCGgtacacattt ... ggctttgaagGAACTGGAATAGATAAACCGGATTATTTGGCGACGGTGGATGTAGATCCAA
EST: ATGTCTGGTCCATCGGAAGAAACTTATCTACGTAACCGCCGTCTACACCG GAACTGGAATAGAEST: gi|125253658|gb|EL267743.1|EL267743
genomic: ATGTCTGGTCCATCGGA-GAAACTTATCTACGTAACCGCCGTCTACACCGgtacacattt ... ggctttgaagGAACTGGAATAGA
EST: ATGTCTGGTCCATCGGAGAAACTTATACTACGTAACCGCCGTCTACACCG GAACTGGAATAGAEST: gi|125081475|gb|EL142685.1|EL142685
genomic: ATGTCTGGTCCATCGGAGAAACTTAT-CTACGTAACCGCCGTCTACACCGgtacacattt ... ggctttgaagGAACTGGAATAGA
EST: TATGTCTGGTCCATCGGAGAAACTTATCTACGTAACCGCCGTCTACACCG GAACTGGAATAGA
genomic: TATGTCTGGTCCATCGGAGAAACTTATCTACGTAACCGCCGTCTACACCGgtacacattt ... ggctttgaagGAACTGGAATAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGATGTTGCAAGTACGGTGGTCCTGGTTACGCGACTCCTCTCGCCGCTATGTCTGGTCCATCGGAGAAACTTATCTACGTAACCGCCGTCTACACCGgtacacatttgatttgatttgtcataaatttctactgttttagaatccagatcgaatcttcacggaatcttgaatattccaaatcgaatcttgattctgatatctttttggctttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA