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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCAAGGCTGAGAAAGAGAAACGTTAGCTCCGATTTTCCAGAACAGATTGCTTTAGCTCTCTCTACACCAACCTCCATGTGGGTTTCTTGGGTCACTGgtaaattctgttttcaaagttttgtcttttaattcaattttgtctcttgagtcctattttaaaactagggttttgagagttttgtttatatgtttcattttcag

Basic information

species Arabidopsis thaliana
transcript AT4G13700.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G13700.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA19G03220.1 (Glycine max), 5'ss of exon 1
---CATCCAAGGCTGAGAAAGAGAAACGTTAGCTCCGATTTTCCAGAACAGATTGCTTTAGCTCTCTCTACACCAACCTCCATGTGGGTTTCTTGGGTCACTGgtaaattctgttttcaaagttttgtcttttaattcaattttgtctcttgagtcctattttaaaactagggttttgagagttttgtttatatgtttcattttcag----
   ||||||||||| |||||||   | || |  ||  | || || |||||||||||| | ||  | ||| ||||||| |||||||||||||||||||| |||||||  ||   || ||    |  | || |   | |     |    ||||   |  | ||| || | ||     |  | ||| || ||| ||    | || |  |     
ACTCATCCAAGGCTCAGAAAGA---ATGTCACTTCAAACTTCCCTGAACAGATTGCTCTTGCAATTTCTTCACCAACTTCCATGTGGGTTTCTTGGGTTACTGgtac-tttaattatc----tcctctcctcagaatttccataaaatctt---tgttttttaaagagtaaatactaaatagtcttctttgtactgataatataaaaagaa