Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAGTTGTTAATGGTTTTAACGGCGGTTTCTTCGCCGTTAATAATGGCTTTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacatctctcttctctcttctctgtgattttggggttttgaatcaaattgttctttagggtttttgatgattcttcattttggtttctctgtttcttcttgtgtgtgtttgtgagttttaaaaatctcacctttatgtgtcaaaatgatttgatttgaaacag

Basic information

species Arabidopsis thaliana
transcript AT4G10610.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86046078|gb|DR341833.1|DR341833
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGAAACGGGAGAATGAATCCTA
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGG-AGAATGAATCCTA
EST: gi|86046066|gb|DR341821.1|DR341821
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTC
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTC
EST: gi|86046042|gb|DR341797.1|DR341797
EST:     TTATTGCTGCCGGAAATTTCCCCGTCAACGAAGACAGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: gi|86046052|gb|DR341807.1|DR341807
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: gi|86046043|gb|DR341798.1|DR341798
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: gi|86046080|gb|DR341835.1|DR341835
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGA-GTCGTTCGGACAACAAGGGAA
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAA
EST: gi|86046079|gb|DR341834.1|DR341834
EST:     TGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
genomic: TGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGG-TAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: gi|86046053|gb|DR341808.1|DR341808
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: gi|116466690|gb|EG509282.1|EG509282
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: gi|86046061|gb|DR341816.1|DR341816
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAWGGGAAACGGAGAATGAATCCTAGGACAAGT
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: gi|86046074|gb|DR341829.1|DR341829
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGG
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGG
EST: gi|86046059|gb|DR341814.1|DR341814
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: gi|86046075|gb|DR341830.1|DR341830
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGAAAC
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAAC
EST: gi|116466689|gb|EG509281.1|EG509281
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: gi|86046073|gb|DR341828.1|DR341828
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAA
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAA
EST: gi|116412046|gb|EG454638.1|EG454638
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGAAACGGAGGATGAATCCTAGGACAAGT
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: gi|86046076|gb|DR341831.1|DR341831
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAAGAAAGTCGTTCGGACAACCAAGGGGAAACGGAGAAT
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAA-GAA-GTCGTTCGGACAAC-AAGGG-AAACGGAGAAT
EST: gi|86046077|gb|DR341832.1|DR341832
EST:     TTGTTGSTGCCGGAAATTTCCCCGTCAASGAWGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGA
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGA
EST: gi|86046050|gb|DR341805.1|DR341805
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGAC
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGAC
EST: gi|86046062|gb|DR341817.1|DR341817
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGA
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGA
EST: gi|86046041|gb|DR341796.1|DR341796
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: gi|86046040|gb|DR341795.1|DR341795
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGAAACG-ANGAATGAATCCTAGGACAAG
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGA-GAATGAATCCTAGGACAAG
EST: gi|86046054|gb|DR341809.1|DR341809
EST:     TTGTTGMTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGGAATCCTAGGACAAG
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATG-AATCCTAGGACAAG
EST: gi|86046063|gb|DR341818.1|DR341818
EST:     TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG                         AAGAAGTCGTTCGG
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCAGTTGTTAATGGTTTTAACGGCGGTTTCTTCGCCGTTAATAATGGCTTTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacatctctcttctctcttctctgtgattttggggttttgaatcaaattgttctttagggtttttgatgattcttcattttggtttctctgtttcttcttgtgtgtgtttgtgagttttaaaaatctcacctttatgtgtcaaaatgatttgatttgaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA