1 5' 3' | 2 5' 3' | 3 5' 3' |
AGATAAGAGGTTGAAGAAGAAGAAGATGCCAGGTCCAGTTATTGAGGAAGTGAATGAGGAGGCTCTTATGGATGCCATTAAAGAGCAGATGAAGCTCCAGgtattgtaatcttcttcttctctatttgttttttaagagaatcgatttttgttcgattttgatttggtttgtgttatggagcag
species | Arabidopsis thaliana |
transcript | AT4G10480.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CATTAAAGAGCAGATGAAGCTCCAG AAGGAGAACGATGTTGTTGTTGAGGATGTGAAAGATGGAGACGAAGACGATEST: gi|124927948|gb|EL005636.1|EL005636
genomic: CATTAAAGAGCAGATGAAGCTCCAGgtattgtaat ... tatggagcagAAGGAGAACGATGTTGTTGTTGAGGATGTGAAAGATGGAGACGAAGACGAT
EST: TGAATGAGGAGGCTCTTATGGATGCCATTAAAGGGCAGATGAAGCTCCAG AAGGAGAACGATGTTGTTGTTGEST: gi|164147130|gb|ES029380.1|ES029380
genomic: TGAATGAGGAGGCTCTTATGGATGCCATTAAAGAGCAGATGAAGCTCCAGgtattgtaat ... tatggagcagAAGGAGAACGATGTTGTTGTTG
EST: AGCAGATGAAGCTCCAG AAGGAGAACGATGTTGTTGTTGAGGATGTGAAAGATGGAGACGAAGACGATEST: gi|164203486|gb|ES044215.1|ES044215
genomic: AGCAGATGAAGCTCCAGgtattgtaat ... tatggagcagAAGGAGAACGATGTTGTTGTTGAGGATGTGAAAGATGGAGACGAAGACGAT
EST: GAGCAGATGAAGCTCCAG AAGGAGAACGATGTTGTTGTTGAGGATGTGAAAGATGGAGACGAAGACGAT
genomic: GAGCAGATGAAGCTCCAGgtattgtaat ... tatggagcagAAGGAGAACGATGTTGTTGTTGAGGATGTGAAAGATGGAGACGAAGACGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATAAGAGGTTGAAGAAGAAGAAGATGCCAGGTCCAGTTATTGAGGAAGTGAATGAGGAGGCTCTTATGGATGCCATTAAAGAGCAGATGAAGCTCCAGgtattgtaatcttcttcttctctatttgttttttaagagaatcgatttttgttcgattttgatttggtttgtgttatggagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC