1 5' 3' | 2 5' 3' | 3 5' 3' |
CCCTAGCAGACCTCTTTTGTGTTCTTCACTCTCCAGCGATCGTTTATTGCTTGAAGACGGCTTCTTCTTCTCACAAACCTCATCTCTGCTAATCAAAATGgtaattagggttttcgaatttctcctttccctcttccaaaatgttctcgaacaatcgatctggaattaaaatggtaattaggttaactagattcatatat...
species | Arabidopsis thaliana |
transcript | AT4G09800.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAACCTCATCTCTGCTAATCAAAATG TCTCTGGTTGCAAATGAGGAGTTTCAACACATTCTTCGTGTGTTGAATACTEST: gi|164204771|gb|EL973135.1|EL973135
genomic: AAACCTCATCTCTGCTAATCAAAATGgtaattaggg ... gattgtgtagTCTCTGGTTGCAAATGAGGAGTTTCAACACATTCTTCGTGTGTTGAATACT
EST: GCTAATCAAAATG TCTCTGGTTGCAAATGAGGAGTTTCAACACATTCTTCGTGTGTTGAATACTEST: gi|124723746|gb|EH815148.1|EH815148
genomic: GCTAATCAAAATGgtaattaggg ... gattgtgtagTCTCTGGTTGCAAATGAGGAGTTTCAACACATTCTTCGTGTGTTGAATACT
EST: CTAATCAAAATG TCTCTGGTTGCAAATGAGGAGTTTCAACACATTCTTCGTGTGTTGAATACT
genomic: CTAATCAAAATGgtaattaggg ... gattgtgtagTCTCTGGTTGCAAATGAGGAGTTTCAACACATTCTTCGTGTGTTGAATACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTAGCAGACCTCTTTTGTGTTCTTCACTCTCCAGCGATCGTTTATTGCTTGAAGACGGCTTCTTCTTCTCACAAACCTCATCTCTGCTAATCAAAATGgtaattagggttttcgaatttctcctttccctcttccaaaatgttctcgaacaatcgatctggaattaaaatggtaattaggttaactagattcatatat
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattaaaa