1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATAAATCAATGGATCATCAAAATTATCAATACCAAAATCCTTTCGAGAGACGACCCATCCTTAAATCCAAAGCTCCTGCTGTGAAGTGGATCAAAGAATGgtacttttctgattccatcacttatacgtcttttagattacagattcttaaaagtttctcctttgttttag
species | Arabidopsis thaliana |
transcript | AT4G06634.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGACCCATCCTTAAATCCAAAGCTCCTGCTGTGAAGTGGATCAAAGAATG GGTACCACAAGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATGEST: gi|86073043|gb|DR368800.1|DR368800
genomic: CGACCCATCCTTAAATCCAAAGCTCCTGCTGTGAAGTGGATCAAAGAATGgtacttttct ... tttgttttagGGTACCACAAGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATG
EST: CGACCCATCCTTAAATCCAAAGCTCCTGCTGTGAAGTGGATCAAAGAATG GGTACCACAAGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATGEST: gi|86073042|gb|DR368799.1|DR368799
genomic: CGACCCATCCTTAAATCCAAAGCTCCTGCTGTGAAGTGGATCAAAGAATGgtacttttct ... tttgttttagGGTACCACAAGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATG
EST: CGACCCATCCTTAAATCCAAAGCTCCTGCTGTGAAGTGGATCAAAGAATG GGTACCACAAGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATGEST: gi|86073041|gb|DR368798.1|DR368798
genomic: CGACCCATCCTTAAATCCAAAGCTCCTGCTGTGAAGTGGATCAAAGAATGgtacttttct ... tttgttttagGGTACCACAAGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATG
EST: CGACCCATCCTTAAATCCAAAGCTCCTGCTGTGAAGTGGATCAAAGAATG GGTACCACAAGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATG
genomic: CGACCCATCCTTAAATCCAAAGCTCCTGCTGTGAAGTGGATCAAAGAATGgtacttttct ... tttgttttagGGTACCACAAGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAATCAATGGATCATCAAAATTATCAATACCAAAATCCTTTCGAGAGACGACCCATCCTTAAATCCAAAGCTCCTGCTGTGAAGTGGATCAAAGAATGgtacttttctgattccatcacttatacgtcttttagattacagattcttaaaagtttctcctttgttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA