Sequence
atgc intronic sequence ATGC exonic sequenceTCATGTGCCGTCACGCTGTTGATCGTAGCCAGGGAGGCTTGGTTGATATCGGTATTTGGTACTTTGGTACTGTTGATCTCCTCAATTACATCGCCCATAGgttctctcttttcccactcaaaatttcgccaatttttatttccgtcaaaaggagtttttgattccttgtttagagaacttggattgatttgatttcaata...
Basic information
species | Arabidopsis thaliana |
transcript | AT4G05460.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19874502|gb|AU235333.1|AU235333EST: GGTATTTGGTACTTTGGTACTGTTGATCTCCTCAATTACATCGCCCATAG GTCGAGTAATCTGAGAAGCCTTAGACTTATAAGGTGTTCTCAAATTACAGA
genomic: GGTATTTGGTACTTTGGTACTGTTGATCTCCTCAATTACATCGCCCATAGgttctctctt ... ttatttgcagGTCGAGTAATCTGAGAAGCCTTAGACTTATAAGGTGTTCTCAAATTACAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCATGTGCCGTCACGCTGTTGATCGTAGCCAGGGAGGCTTGGTTGATATCGGTATTTGGTACTTTGGTACTGTTGATCTCCTCAATTACATCGCCCATAGgttctctcttttcccactcaaaatttcgccaatttttatttccgtcaaaaggagtttttgattccttgtttagagaacttggattgatttgatttcaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaagga