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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATACCCAAAGAGCTCTTCTTCTTCACAATTCAGATTCCAATTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAGgtagatttctgagttcttattgtatttcttcgatttgtttcgttcgatcgcaatttaggctctgttctttgattttgatctcgttaatctctgatcggag...

Basic information

species Arabidopsis thaliana
transcript AT4G05050.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301501384|gb|HO206924.1|HO206924
EST:     TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAG                         ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
genomic: TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAGgtagatttct ... tgattaacagATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
EST: gi|116460405|gb|EG502997.1|EG502997
EST:     TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAG                         ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
genomic: TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAGgtagatttct ... tgattaacagATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
EST: gi|47830375|gb|CK120059.1|CK120059
EST:     CAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAG                         ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
genomic: CAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAGgtagatttct ... tgattaacagATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
EST: gi|301502429|gb|HO207969.1|HO207969
EST:     TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAG                         ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
genomic: TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAGgtagatttct ... tgattaacagATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
EST: gi|47831867|gb|CK121551.1|CK121551
EST:     TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAG                         ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
genomic: TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAGgtagatttct ... tgattaacagATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
EST: gi|301502221|gb|HO207761.1|HO207761
EST:     TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAG                         ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
genomic: TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAGgtagatttct ... tgattaacagATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
EST: gi|47829838|gb|CK119522.1|CK119522
EST:     CAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAG                         ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
genomic: CAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAGgtagatttct ... tgattaacagATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
EST: gi|86067023|gb|DR362780.1|DR362780
EST:     TCTCTCAATTCTCTCTACCGTGATCAAG                         ATGCAGATTTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
genomic: TCTCTCAAATCTCTCAACCGTGATCAAGgtagatttct ... tgattaacagATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
EST: gi|47829085|gb|CK118769.1|CK118769
EST:     TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAG                         ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
genomic: TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAGgtagatttct ... tgattaacagATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
EST: gi|301502031|gb|HO207571.1|HO207571
EST:     CTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAG                         ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
genomic: CTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAGgtagatttct ... tgattaacagATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
EST: gi|47831882|gb|CK121566.1|CK121566
EST:     TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAG                         ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
genomic: TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAGgtagatttct ... tgattaacagATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
EST: gi|47832327|gb|CK122011.1|CK122011
EST:     CAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAG                         ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
genomic: CAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAGgtagatttct ... tgattaacagATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
EST: gi|116452401|gb|EG494993.1|EG494993
EST:     TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAG                         ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
genomic: TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAGgtagatttct ... tgattaacagATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
EST: gi|47829828|gb|CK119512.1|CK119512
EST:     CAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAG                         ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
genomic: CAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAGgtagatttct ... tgattaacagATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
EST: gi|116424065|gb|EG466657.1|EG466657
EST:     TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAG                         ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
genomic: TTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAGgtagatttct ... tgattaacagATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
EST: gi|124888568|gb|EH967470.1|EH967470
EST:     CTCAAATCTCTCAACCGTGATCAAG                         ATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG
genomic: CTCAAATCTCTCAACCGTGATCAAGgtagatttct ... tgattaacagATGCAGATCTTCGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATACCCAAAGAGCTCTTCTTCTTCACAATTCAGATTCCAATTTTCTCAAACTCTAAAATCAATCTCTCAAATCTCTCAACCGTGATCAAGgtagatttctgagttcttattgtatttcttcgatttgtttcgttcgatcgcaatttaggctctgttctttgattttgatctcgttaatctctgatcggag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcgatcgc