1 5' 3' | 2 5' 3' | 3 5' 3' |
CTCCTCCCGCTCTTGCTTCTTGCCATTGCTGTTTCGAGCTCTCCTCAAAGCCCTAATTTTCTCCTCTTCTTCTTCATTCTCTCACCATGAAGCTCGTCAGgtatggtttctactcggattctctttatttcttcggtttaattggaatttgcttcgaaattttgagatttctctttgttttcatgctcttcgatgtttgatttcgtatctggattttttcgcag
species | Arabidopsis thaliana |
transcript | AT4G02840.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGAAGCTCGTCAG GTTTTTGATGAAATTGAACAACGAAACAGTTTCAATCGAGCTTAAGAACGGEST: gi|152034269|gb|BP823720.2|BP823720
genomic: TGAAGCTCGTCAGgtatggtttc ... tttttcgcagGTTTTTGATGAAATTGAACAACGAAACAGTTTCAATCGAGCTTAAGAACGG
EST: CCCTAATTTTCTCCTCTTCTTCTTCATTCTCTCA-CATGAAGCTCGTCAG GTTTTTGATGAAATTGAACAACGAAACAGTTTCAATCGAGCTTAAGAACGGEST: gi|19877683|gb|AU238514.1|AU238514
genomic: CCCTAATTTTCTCCTCTTCTTCTTCATTCTCTCACCATGAAGCTCGTCAGgtatggtttc ... tttttcgcagGTTTTTGATGAAATTGAACAACGAAACAGTTTCAATCGAGCTTAAGAACGG
EST: CCCTAATTTTCTCCTCTTCTTCTTCATTCTCTCACCATGAAGCTCGTCAG GTTTTTGATGAAATTGAACAACGAAACAGTTTCAATCGAGCTTAAGAACGGEST: gi|86076061|gb|DR371818.1|DR371818
genomic: CCCTAATTTTCTCCTCTTCTTCTTCATTCTCTCACCATGAAGCTCGTCAGgtatggtttc ... tttttcgcagGTTTTTGATGAAATTGAACAACGAAACAGTTTCAATCGAGCTTAAGAACGG
EST: CCCTAATTTTCTCCTCTTCTTCTTCATTCTCTCACCATGAAGCTCGTCAG GTTTTTGATGAAATTGAACAACGAAACAGTTTCAATCGAGCTTAAGAACGG
genomic: CCCTAATTTTCTCCTCTTCTTCTTCATTCTCTCACCATGAAGCTCGTCAGgtatggtttc ... tttttcgcagGTTTTTGATGAAATTGAACAACGAAACAGTTTCAATCGAGCTTAAGAACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCTCCCGCTCTTGCTTCTTGCCATTGCTGTTTCGAGCTCTCCTCAAAGCCCTAATTTTCTCCTCTTCTTCTTCATTCTCTCACCATGAAGCTCGTCAGgtatggtttctactcggattctctttatttcttcggtttaattggaatttgcttcgaaattttgagatttctctttgttttcatgctcttcgatgtttgatttcgtatctggattttttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC