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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGATTTACACAAATCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagtaaaatctatgagcttttgctttatcttcgaatctaagatcaggaattgatcagggtttttacccaatttcgataattgtcttcttcgctggattgatttttgttctggaattgtttatcgtgtgtag

Basic information

species Arabidopsis thaliana
transcript AT4G02620.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86018446|gb|DR314192.1|DR314192
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|86018455|gb|DR314201.1|DR314201
EST:     AAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: AAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|164189721|gb|ES125110.1|ES125110
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGNG                         TTGAATCAAATATGG
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGG
EST: gi|86018467|gb|DR314213.1|DR314213
EST:     ATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: ATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|116395092|gb|EG437684.1|EG437684
EST:     GAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCT
genomic: GAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCT
EST: gi|86018442|gb|DR314188.1|DR314188
EST:     AAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: AAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|86018460|gb|DR314206.1|DR314206
EST:     ATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: ATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|86018443|gb|DR314189.1|DR314189
EST:     GAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: GAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|86018454|gb|DR314200.1|DR314200
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|86018463|gb|DR314209.1|DR314209
EST:     ATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: ATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|125294365|gb|EL308450.1|EL308450
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGG
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGG
EST: gi|86018451|gb|DR314197.1|DR314197
EST:     GAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: GAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|124999957|gb|EL072226.1|EL072226
EST:     GGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACT
genomic: GGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACT
EST: gi|86018447|gb|DR314193.1|DR314193
EST:     ATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: ATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|86018456|gb|DR314202.1|DR314202
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|86018466|gb|DR314212.1|DR314212
EST:     ATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCDCAACTCTGCCC
genomic: ATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|86018458|gb|DR314204.1|DR314204
EST:     AATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: AATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|86018457|gb|DR314203.1|DR314203
EST:     AAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: AAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|86018461|gb|DR314207.1|DR314207
EST:     AAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: AAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|125154180|gb|EL184924.1|EL184924
EST:     AAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGAT
genomic: AAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGAT
EST: gi|125030723|gb|EL102992.1|EL102992
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAG
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAG
EST: gi|86018462|gb|DR314208.1|DR314208
EST:     ATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: ATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|86018450|gb|DR314196.1|DR314196
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|164116708|gb|ES105405.1|ES105405
EST:     AAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCC
genomic: AAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCC
EST: gi|164221944|gb|ES160630.1|ES160630
EST:     ATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAACCAAATATGGCTGGGAGAGCTACGA
genomic: ATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGA
EST: gi|86018444|gb|DR314190.1|DR314190
EST:     AAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: AAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|124983053|gb|EL055811.1|EL055811
EST:     ACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: ACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|124958059|gb|EL032833.1|EL032833
EST:     GAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTG
genomic: GAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTG
EST: gi|86018453|gb|DR314199.1|DR314199
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|86075878|gb|DR371635.1|DR371635
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGWACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|86018449|gb|DR314195.1|DR314195
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|86018464|gb|DR314210.1|DR314210
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|124935843|gb|EL012795.1|EL012795
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATA
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATA
EST: gi|86018452|gb|DR314198.1|DR314198
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|125258056|gb|EL272141.1|EL272141
EST:     GAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCG
genomic: GAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCG
EST: gi|164030314|gb|ES124022.1|ES124022
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGG
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGG
EST: gi|86018459|gb|DR314205.1|DR314205
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|125239327|gb|EL253412.1|EL253412
EST:     GAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTG
genomic: GAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTG
EST: gi|86018448|gb|DR314194.1|DR314194
EST:     AAATCAAATCGAAGAAGGAGAGAAGAACATAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: AAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|47828671|gb|CK118355.1|CK118355
EST:     GAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: GAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|86018445|gb|DR314191.1|DR314191
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|86018465|gb|DR314211.1|DR314211
EST:     TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
genomic: TCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTCTGCCC
EST: gi|164202017|gb|ES097945.1|ES097945
EST:     GGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTC
genomic: GGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAACTC
EST: gi|125122425|gb|EL169055.1|EL169055
EST:     AGGAGAGAAGAACAGAGAAAAAGAG                         TTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAA
genomic: AGGAGAGAAGAACAGAGAAAAAGAGgtaatgagta ... tcgtgtgtagTTGAATCAAATATGGCTGGGAGAGCTACGATCCCTGCTCGCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGTGATTTACACAAATCTATCTATCAAATCAAATCGAAGAAGGAGAGAAGAACAGAGAAAAAGAGgtaatgagtaaaatctatgagcttttgctttatcttcgaatctaagatcaggaattgatcagggtttttacccaatttcgataattgtcttcttcgctggattgatttttgttctggaattgtttatcgtgtgtag

- - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC