1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGGAAAGGACCTGGGTTTCTTAGACCTGAAGGAGGACATGGAAGTGGGAAAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTgtaagttctgttcttgctttggtgtttgattattagaaatgggaagaaatcgaatttgagggttttgaagagaacatttttggtaacttttgttttagtt...
species | Arabidopsis thaliana |
transcript | AT4G02590.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCT GTTTTCCACGGGCAGCCTATGCAACEST: gi|116470271|gb|EG512863.1|EG512863
genomic: AAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTgtaagttctg ... tgtctggaagGTTTTCCACGGGCAGCCTATGCAAC
EST: AAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCT GTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAGEST: gi|116470276|gb|EG512868.1|EG512868
genomic: AAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTgtaagttctg ... tgtctggaagGTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAG
EST: AAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCT GTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAGEST: gi|116435549|gb|EG478141.1|EG478141
genomic: AAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTgtaagttctg ... tgtctggaagGTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAG
EST: AAAGATTCTCAGATGATGTCGTTGATAATCGATGTTCTTCTATGAAACCT GTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAG
genomic: AAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTgtaagttctg ... tgtctggaagGTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGAAAGGACCTGGGTTTCTTAGACCTGAAGGAGGACATGGAAGTGGGAAAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTgtaagttctgttcttgctttggtgtttgattattagaaatgggaagaaatcgaatttgagggttttgaagagaacatttttggtaacttttgttttagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG