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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTGAGTCCACAGAGTAATTATTGTGATGCTTCTAATAAGGATTGGCCTTGTGTTTCTGGCAAGTCTTACAAAGGAAGAGGTCCCATTCAACTATCTTGgtaagtctacaaaattaattattaaccaataaccatttatatctatttatttgctcgaacaactaggtctacaatagttcaatgccccatgaaaacatta...

Basic information

species Arabidopsis thaliana
transcript AT4G01700.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125266733|gb|EL280818.1|EL280818
EST:     CAACTATCTTG                         GAATTACAATTACGGACAGGCGGGTCGAGCATTGGGTTTCGACGGTTTACA
genomic: CAACTATCTTGgtaagtctac ... ggatatatagGAATTACAATTACGGACAGGCGGGTCGAGCATTGGGTTTCGACGGTTTACA
EST: gi|124789767|gb|EH879446.1|EH879446
EST:     AAAGGAAGAGGTCCCATTCAACTATCTTG                         GAATTACAATTACGGACAGGCGGGTCGAGCATTGGGTTTCGACGGTTTACA
genomic: AAAGGAAGAGGTCCCATTCAACTATCTTGgtaagtctac ... ggatatatagGAATTACAATTACGGACAGGCGGGTCGAGCATTGGGTTTCGACGGTTTACA
EST: gi|125307039|gb|EL321124.1|EL321124
EST:     GTGTTTCTGGCAAGTCTTAACAAAGGAAGAGGTCCCATTCAACTATCTTG                         GAATTACAATTAC
genomic: GTGTTTCTGGCAAGTCTTA-CAAAGGAAGAGGTCCCATTCAACTATCTTGgtaagtctac ... ggatatatagGAATTACAATTAC
EST: gi|125034140|gb|EL106409.1|EL106409
EST:     TGTGTTTCTGGCAAGTCTTACAAAGGAAGAGGTCCCATTCAACTATCTTG                         GAATTACAATTACGGACAGGCGGGTCGAGCATTGGGTTTCGACGGTTTACA
genomic: TGTGTTTCTGGCAAGTCTTACAAAGGAAGAGGTCCCATTCAACTATCTTGgtaagtctac ... ggatatatagGAATTACAATTACGGACAGGCGGGTCGAGCATTGGGTTTCGACGGTTTACA
EST: gi|124760769|gb|EH850899.1|EH850899
EST:     GTGTTTCTGGCAAGTCTTACAAAGGAAGAGGTACCCATTCAACTATCTTG                         GAATTACAATTACGGAC
genomic: GTGTTTCTGGCAAGTCTTACAAAGGAAGAGGT-CCCATTCAACTATCTTGgtaagtctac ... ggatatatagGAATTACAATTACGGAC
EST: gi|125272173|gb|EL286258.1|EL286258
EST:     TGTGTTTCTGGCAAGTCTTACAAAGGAAGAGGTCCCATTCAACTATCTTG                         GAATTACAATTACGGACAGGCGGGTCGAGCATTGG
genomic: TGTGTTTCTGGCAAGTCTTACAAAGGAAGAGGTCCCATTCAACTATCTTGgtaagtctac ... ggatatatagGAATTACAATTACGGACAGGCGGGTCGAGCATTGG
EST: gi|124897927|gb|EH974141.1|EH974141
EST:     TGTGTTTCTGGCAAGTCTTACAAAGGAAGAGGTCCCATTCAACTATCTTG                         GAATTACAATTACGGACAGGCGGGTCGAGCATTGGGTTTCGACGGTTTACA
genomic: TGTGTTTCTGGCAAGTCTTACAAAGGAAGAGGTCCCATTCAACTATCTTGgtaagtctac ... ggatatatagGAATTACAATTACGGACAGGCGGGTCGAGCATTGGGTTTCGACGGTTTACA
EST: gi|125149374|gb|EL182568.1|EL182568
EST:     TGTGTTTCTGGCAAGTCTTACAAAGGAAGAGGTCCCATTCAACTATCTTG                         GAATTACAATTACGGACAGGCGGGTCGAGCATTGGGTTTCGACGGTTTACA
genomic: TGTGTTTCTGGCAAGTCTTACAAAGGAAGAGGTCCCATTCAACTATCTTGgtaagtctac ... ggatatatagGAATTACAATTACGGACAGGCGGGTCGAGCATTGGGTTTCGACGGTTTACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGTGAGTCCACAGAGTAATTATTGTGATGCTTCTAATAAGGATTGGCCTTGTGTTTCTGGCAAGTCTTACAAAGGAAGAGGTCCCATTCAACTATCTTGgtaagtctacaaaattaattattaaccaataaccatttatatctatttatttgctcgaacaactaggtctacaatagttcaatgccccatgaaaacatta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaacat