1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTAAGAAGCAGACTCTGTTTTCATGGCTGTTTACAATACCAAACTCTGTTTGGCCTCTGTTTTCTTGCTCTTAGGGCTTCTCTTGGCTTTTGACTTGAAGgtaacttacataatcatcatcttacttagtttctcttaagtttgatttgtgtaaagagttacgaagtttggtactgtgttttagtttagatccaatattgatcaagttcgttcataaaaaactatactttaatagaaagacaaagaaagatccaaactttgttgactaaagtcttctgggttttgtcttaatcag
species | Arabidopsis thaliana |
transcript | AT4G01610.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGCCTCTGTTTTCTTGCTCTTAGGGCTTCTCTTGGCTTTTGACTTGAAG GGTATAGAAGCAEST: gi|301501566|gb|HO207106.1|HO207106
genomic: TGGCCTCTGTTTTCTTGCTCTTAGGGCTTCTCTTGGCTTTTGACTTGAAGgtaacttaca ... tcttaatcagGGTATAGAAGCA
EST: TGGCCTCTGTTTTCTTGCTCTTAGGGCTTCTCTTGGCTTTTGACTTGAAG GGTATAGAAGCAGAAAGTCTTACCAAACAGAAACTGGACTCGAAGATACTTEST: gi|124723233|gb|EH814635.1|EH814635
genomic: TGGCCTCTGTTTTCTTGCTCTTAGGGCTTCTCTTGGCTTTTGACTTGAAGgtaacttaca ... tcttaatcagGGTATAGAAGCAGAAAGTCTTACCAAACAGAAACTGGACTCGAAGATACTT
EST: CTTTTGACTTGAAG GGTATAGAAGCAGAAAGTCTTACCAAACAGAAACTGGACTCGAAGATACTT
genomic: CTTTTGACTTGAAGgtaacttaca ... tcttaatcagGGTATAGAAGCAGAAAGTCTTACCAAACAGAAACTGGACTCGAAGATACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAAGAAGCAGACTCTGTTTTCATGGCTGTTTACAATACCAAACTCTGTTTGGCCTCTGTTTTCTTGCTCTTAGGGCTTCTCTTGGCTTTTGACTTGAAGgtaacttacataatcatcatcttacttagtttctcttaagtttgatttgtgtaaagagttacgaagtttggtactgtgttttagtttagatccaatattgatcaagttcgttcataaaaaactatactttaatagaaagacaaagaaagatccaaactttgttgactaaagtcttctgggttttgtcttaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG