1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTACAAAGTCAAATTCGCTGATCGAGTCATCCAAACGGAATCATCAATACGTCAAAAGGGAATCGTTAAAACTGATATTAATTTCCAAGAAATCCTCACTgtgagttccatagttttgggtcaatgttgcaattcaaagaagaaaagctgaaaactttaggatgaattttcattaaatttggtttgaatttgtttcag
species | Arabidopsis thaliana |
transcript | AT4G01040.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCAAAAGGGAATCGTTAAAACTGATATTAATTTCCAAGAAATCCTCACT GAACATTCCAAGGCTTCAGAGAATTCAACTAGGCACTATGEST: gi|164185011|gb|ES099023.1|ES099023
genomic: GTCAAAAGGGAATCGTTAAAACTGATATTAATTTCCAAGAAATCCTCACTgtgagttcca ... tttgtttcagGAACATTCCAAGGCTTCAGAGAATTCAACTAGGCACTATG
EST: TCCAAGAAATCCTCACT GAACATTCCAAGGCTTCAGAGAATTCAACTAGGCACTATGATTATCCAGTGEST: gi|86057406|gb|DR353163.1|DR353163
genomic: TCCAAGAAATCCTCACTgtgagttcca ... tttgtttcagGAACATTCCAAGGCTTCAGAGAATTCAACTAGGCACTATGATTATCCAGTG
EST: GTCAAAAGGGAATCGTTAAAACTGATATTAATTTCCAAGAAATCCTCACT GAACATTCCAAGGCTTCAGATAATTCAACTAGGCACTATGATTATCCAGTG
genomic: GTCAAAAGGGAATCGTTAAAACTGATATTAATTTCCAAGAAATCCTCACTgtgagttcca ... tttgtttcagGAACATTCCAAGGCTTCAGAGAATTCAACTAGGCACTATGATTATCCAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACAAAGTCAAATTCGCTGATCGAGTCATCCAAACGGAATCATCAATACGTCAAAAGGGAATCGTTAAAACTGATATTAATTTCCAAGAAATCCTCACTgtgagttccatagttttgggtcaatgttgcaattcaaagaagaaaagctgaaaactttaggatgaattttcattaaatttggtttgaatttgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA